Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq48 188 1e-42 seq50 149 9e-31 >seq48 Length=300044 Score = 188 bits (208), Expect = 1e-42 Identities = 388/572 (68%), Gaps = 4/572 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | ||| |||| | ||||| ||||| | | | || | | |||| Sbjct 143817 ACCAACGGCACCTCCAATGGCATCGTGCCCATGCTGCGTGTTTTTAACAACACGGCACGC 143758 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||| ||||| || || || |||||| | ||| ||||| |||| || ||| Sbjct 143757 TATGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCTTTTGCCATCTACCTGGAGCCATGG 143698 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || |||| ||||||| ||| ||| || ||| || Sbjct 143697 CACGCCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGC 143638 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| | || || || ||| | || || ||||||||||||| || | | Sbjct 143637 GCCCGCGACCTCTTCCTGGCCCTGTGGATCCCGGACCTGTTCATGAAGCGGGTTGAGAAG 143578 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| |||||| || ||||||||| || || ||||| ||| | || |||| ||| Sbjct 143577 AACGGCGACTGGACGCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCGGACTGCTACGGC 143518 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165 || ||||| ||||| |||| | ||||||| |||||| | || ||||| | Sbjct 143517 GAGGAGTTCGAGGCTCTGTACGAGAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACG-CT 143459 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | |||| |||||| | |||||| | ||| ||| |||||||| | || | Sbjct 143458 CAAGGCGC-AGAAGCTGTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCCT 143400 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| || |||||||| | || ||||| |||||||| || |||||||||| Sbjct 143399 TCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATTC 143340 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 ||||||| |||||||| || || | |||||| | | || |||||| ||| || | Sbjct 143339 GCAGCTCCAACCTGTGCACCGAGATCATCGAGTACTCGGCGCCCGACGAGGTGGCTGTGT 143280 Query 97345 GCGTTCTGGCATCGGTCAATCTGCCCAAGTTT 97376 || ||||| ||| | ||||| ||||| Sbjct 143279 GCAACCTGGCGTCGCTGGCGCTGCCGCAGTTT 143248 >seq50 Length=290317 Score = 149 bits (164), Expect = 9e-31 Identities = 308/452 (68%), Gaps = 21/452 (5%) Strand=Plus/Plus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 |||| | || ||||||||||| ||||| |||||||| || ||||| | |||| Sbjct 113168 GACTCATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCTATCT 113227 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTC 125544 | ||||| ||||||||||| || |||||||| || || | |||||| | || |||| Sbjct 113228 TCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTTACCTTCTCCAACGAGCTCATCTCTC 113287 Query 125545 GAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG 125604 | || |||||||| ||| ||||||||| || || || | || || Sbjct 113288 GTGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTTCTCCCACA---TGA------ 113338 Query 125605 AGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 || ||| ||||| | ||| | || | || | ||||||||| | ||| || | Sbjct 113339 AGAACAGGCCCAGCAAGCAAATGATCGAGGAGATCATCGTCGATGCCGTCAAGATCGAGC 113398 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATG 125723 ||||||| || ||||| |||| ||| | || || | || ||||||| || || ||| Sbjct 113399 AAGAGTTCCTGACCGAGGCCCTGCCG-TGTGCTCTGCTCGGTATGAACTCGAACCTCATG 113457 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CA 125778 ||||||| |||||||||||||| || || ||| |||| | ||| || || Sbjct 113458 AAGCAGTACATCGAGTTTGTGGCAGACCGCCTCCTG-----GTTGCTCTCGGCAACGACA 113512 Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 || | ||| ||| || ||||| ||||||||| | ||| || || | || |||| Sbjct 113513 AGGTCTACCGCGCATCCAACCCCTTCGATTTCATGGAGAACATCTCCCTGGGCGGCAAGA 113572 Query 125839 CCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||| ||||||||| || |||||||| Sbjct 113573 CCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 113604 Score = 125 bits (138), Expect = 1e-23 Identities = 206/293 (70%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| |||| ||| Sbjct 112258 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACAGCCGAGGAGATCGACCTG 112317 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| |||| ||| | || | | || || |||| | || || || Sbjct 112318 TCCAAGGACCTCCACGACTGGAACAACAAGCTCAAC-GACGATGAGAAGTACTTCATCTC 112376 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 || || | ||||||||||||| ||| ||||| ||||||||||| || || || || Sbjct 112377 ACATATCCTCGCCTTCTTTGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGTGGAGCG 112436 Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252 ||| || | || ||| |||| |||| ||||| |||||||| || ||| Sbjct 112437 CTTC-----AGCGGCGAAGTCCAGGTTCCCGAGGCCCGTTGCTTCTACGGATTTCAGATC 112491 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| |||||| | ||||| || | ||||| ||||| |||| ||||| Sbjct 112492 ATGATGGAGAACATCCACTCTGAGACCTACTCGCTCCTGATCGACACCTACAT 112544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056911979720