Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 3e-13 seq42 84.2 1e-11 >seq2 Length=2981670 Score = 89.7 bits (98), Expect = 3e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 || ||||| | |||||| | ||||||||| || ||| | || ||||| || | |||| Sbjct 1776807 GGGAAGGGGCGGGGCTCGCGCTCGAGCTGGGTGCGCAGGGCGTCGACGTGGTCGACGTAG 1776866 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 ||||| ||||| |||| |||| | | || || | || || ||| || Sbjct 1776867 ACGTGGGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACGAGGTCGCAGGCGTGGGCG 1776926 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 | ||||| ||| || || ||||||| |||||||| ||||| || || | |||||||| Sbjct 1776927 AGCATGTGCGTCAGCAGCGAGTAGCTCGCGATGTTGAAGGGCACGCCCAGGCCCATGTCG 1776986 Query 25569 CCCCGACCTCTGGTAGAGCTGACA 25592 | |||| |||||||||||| || Sbjct 1776987 CAG-GACCGCTGGTAGAGCTGGCA 1777009 >seq42 Length=391249 Score = 84.2 bits (92), Expect = 1e-11 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 44398 CCCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACATGCGGAGCC 44455 ||| ||| ||||||||||||| ||||| | ||||| |||||||| | | | ||| | Sbjct 11082 CCCCGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCGT-CGGCATC 11025 Query 44456 GTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCATC 44515 || | ||||||||||||||| ||| | | || ||||||||||| ||||||| Sbjct 11024 ATCGTCGACCAGGAGGACATGCCGTTCCAGGACTCAGGCCTGGTGCCCGACATCATCATG 10965 Query 44516 AACCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 ||||| |||| || |||||| | ||||| || Sbjct 10964 AACCCGCACGGTTTCCCCTCCCGAATGACGGT 10933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136576079531