Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq1 96.9 2e-15 >seq4 Length=1956354 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| ||||| || || ||||||||||| || || |||||||| || Sbjct 192985 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGA 193044 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || || || || || ||||| || || |||| ||| Sbjct 193045 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGG 193104 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCA 38267 || ||| || |||||| || || ||| ||||| | || || | ||| || || Sbjct 193105 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGAC--TCC 193162 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | || ||||| || ||||| | ||| |||||||| ||||||||| || Sbjct 193163 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATT 193216 >seq1 Length=4491949 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| ||||| ||||| || || | | || | || || | ||| Sbjct 3513370 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGC 3513311 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || ||||| || || |||| |||| || || |||||| ||| || Sbjct 3513310 TTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTC 3513251 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | || || || | || || || || || ||||| || |||||| Sbjct 3513250 GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTC 3513191 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| || ||||| || ||||| Sbjct 3513190 AGGGTCTTGACGAAGATTTGCAT 3513168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946191704257