Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq50 102 9e-17 >seq50 Length=290317 Score = 102 bits (112), Expect = 9e-17 Identities = 222/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || || || ||||| || ||||| ||||| | | | || ||||| || ||||| Sbjct 112589 GTGTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATC 112530 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | || || || | ||||| |||| |||||||| || || ||||||||||| || Sbjct 112529 AGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 112470 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | || || | | ||| ||||| || | ||| || | || || ||||| || Sbjct 112469 CGGGCCTCGGGAACCTGGACTTCGCCGCTGAAGCGCTCCACCAAGTTCTCGTTGACGATG 112410 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || || ||||| || || | ||||| || || | |||||||| || || Sbjct 112409 CCATCCGAGGCGGCAAAGAAGGCGAGGATATGTGAGATGAAGTACTTCTCATCGTCGTTG 112350 Query 93557 AGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 ||| || | ||| ||| || || || || || |||| || ||| | ||||| ||| Sbjct 112349 AGCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAGGTCGATCTCCTCGGCTGTCCAGAAC 112290 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || || || || || |||||||| | ||| || Sbjct 112289 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 112258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859080692280