Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq4 102 7e-17 >seq1 Length=4491949 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || ||||| || | | Sbjct 3513396 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 3513455 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| || || || || || Sbjct 3513456 GACACGATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 3513515 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| ||| | |||||| |||||| | || ||||||||| Sbjct 3513516 CAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGATTACAAC 3513575 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||| | || | || | || ||||||| || Sbjct 3513576 ATCCAGAAGGAGAGCACCCTCCACCTGGTGCTTCGCCTGCGCGGTGG 3513622 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| | || ||||| | | Sbjct 3513168 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCTTGGAGGTGGAGTCTTCG 3513227 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| |||||||||||||| || ||||| || Sbjct 3513228 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 3513287 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || || | |||||| || || | ||||| |||||| Sbjct 3513288 CAGCGCCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGGACTCTTTCCGACTACAAC 3513347 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 3513348 ATTCAGAAGGA 3513358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | | |||||| | ||| | |||| Sbjct 3512964 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGACAACGTCAAGTCC 3513023 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || || || || || |||||||| Sbjct 3513024 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAG 3513083 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||| ||| | || || ||||| || ||||| || ||||| Sbjct 3513084 CAGCTTGAGGACGGCCGAACCCTTTCGGACTACAATATCCAAAAGGAGTCCAC 3513136 >seq4 Length=1956354 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | | | Sbjct 193212 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 193153 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 193152 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 193093 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| |||||| | |||||||||||| Sbjct 193092 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 193033 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 193032 ATCCAGAAGGA 193022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726736487555