Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 167 4e-36 seq1 161 2e-34 seq185 120 6e-22 seq50 120 6e-22 seq3 84.2 4e-11 >seq4 Length=1956354 Score = 167 bits (184), Expect = 4e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| |||||| ||| || |||||||| |||||||| Sbjct 192986 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGAC 193045 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || |||||||| || Sbjct 193046 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 193105 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | |||||| ||||| ||||| ||| || || || Sbjct 193106 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTC-GCTCGACTCCAC 193164 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||| ||||| |||||||| || Sbjct 193165 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 193215 >seq1 Length=4491949 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| || ||| ||| || |||||||| ||||| || Sbjct 3513622 CCACCGCGCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3513563 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | ||| ||||| || || Sbjct 3513562 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGG 3513503 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||||| || || ||||||| ||| || ||| Sbjct 3513502 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACT 3513443 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || || ||||||||||| |||||||| Sbjct 3513442 TCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || || ||||| || ||||| Sbjct 3513394 CCGCCACGGAGGCGGAGGACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 3513335 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | ||||| || || || || || | || |||||||| || Sbjct 3513334 AGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 3513275 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 3513274 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTCCACC 3513215 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| |||||||||||||| || ||||| Sbjct 3513214 TCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3513168 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || |||| |||| ||| || || ||||| || |||||||| || || || Sbjct 3513851 TCCACCACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGA 3513792 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 3513791 CAAGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGG 3513732 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||| || ||||| || ||||| ||| ||| || || || || | |||||| || Sbjct 3513731 AATGCCCTCTTTGTCCTGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGAC 3513672 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||||||||| || | |||||| ||||| |||||||| Sbjct 3513671 TTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 3513624 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| ||||||||||| |||||||| || || || || Sbjct 3513166 CCTCCACGGAGGCGGAGGACGAGGTGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAA 3513107 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || |||||||| || Sbjct 3513106 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 3513047 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| |||||||| || | || || || Sbjct 3513046 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACC 3512987 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || ||||| Sbjct 3512986 TCGAGGGTGATGGTCTTGCCCGT 3512964 >seq185 Length=1179 Score = 120 bits (132), Expect = 6e-22 Identities = 177/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| || | | | | || |||| ||||| || ||| |||| ||| || || | Sbjct 469 GGTCATCTCAGTGTCGGCGGCATCAAGATCGTGCTCAACGAACACGGTCTTGACCTCGCT 528 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||| ||||| | ||| | || || || || | ||||| ||||| Sbjct 529 CTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTCGACTTGC 587 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929 ||| |||||||||||| || ||||| | | || ||||| | | |||| |||| Sbjct 588 CCGAACCGTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGGAGGTGCGTCT 647 Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCAC 225989 |||||| ||||||||| |||| ||||| |||||||| ||| | |||||||||||||| Sbjct 648 GGTTCAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGTTGCACAGGTCCTCAC 707 Query 225990 CCTCCTCG 225997 |||||||| Sbjct 708 CCTCCTCG 715 >seq50 Length=290317 Score = 120 bits (132), Expect = 6e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || |||||||||||||| || || |||||||||||||| |||||| | Sbjct 113622 CATGACACCAGCCTTCTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 113563 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| ||||||||| || |||||||| |||| | |||| || || Sbjct 113562 CAGGGAGATGTTCTCCATGAAATCGAAGGGGTTGGATGCGCGGTAGACCTTGTCGTTGCC 113503 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||| ||||| |||||||||||||| |||| |||| |||||| Sbjct 113502 GAGAGCAACCAGGAGGCGGTCTGCCACAAACTCGATGTACTGCTTCATGAGGTTCGAGTT 113443 Query 10115 CATGCC 10120 ||| || Sbjct 113442 CATACC 113437 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 || |||||| | || |||||||| | | ||||||||| ||||||| || |||||| Sbjct 112428 CAAGTTCTCGTTGACGATGCCATCCGAGGCGGCAAAGAAGGCGAGGATATGTGAGATGAA 112369 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741 || |||||| ||||| || || | |||||| | |||| | || | || Sbjct 112368 GTACTTCTCATCGTCGTTGAGCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAGGTCGAT 112309 Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 |||||| | |||||||| | ||| ||||||||||||||||||| Sbjct 112308 CTCCTCGGCTGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTG 112264 >seq3 Length=2538176 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 |||| |||| |||||| ||||||||| |||| ||||| |||||||| ||| | ||| Sbjct 1202431 GAGGTGCGTCTGGTTCAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGTTGCA 1202490 Query 225979 CAGGTCCTCACCCTCCTCG 225997 ||||||||||||||||||| Sbjct 1202491 CAGGTCCTCACCCTCCTCG 1202509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619554490840