Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq48 271 8e-68 seq50 120 3e-22 seq1 96.9 3e-15 >seq48 Length=300044 Score = 271 bits (300), Expect = 8e-68 Identities = 1021/1576 (65%), Gaps = 63/1576 (4%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || ||||||| || || |||||||| || | ||| || | | Sbjct 142673 AGGTCCTTGAGCAGCCACGGGTTGACGACCTGGAACTCGCCGGCGAGCACGCGGCGCTGG 142732 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | |||| | Sbjct 142733 TAGATGTTGGATGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTGCTG 142792 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTC 153187 || || |||||| |||||| | || || || |||| |||||| ||| || ||||| | Sbjct 142793 GCTGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGCACACCGTGCTGCTTGA-TGTCGGC 142851 Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTG--T 153245 ||| | |||| ||| ||||| ||| ||||||| | ||||||||||||||||||| Sbjct 142852 CTTGAGAGCCTCCCAGTCCCAGAGCTCCGACGGCTTGACGTTCCACATGTCGTACTGCAG 142911 Query 153246 AACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305 || | | |||| | || ||| | |||| |||| |||| | | ||| Sbjct 142912 AATGCCCTGCGAC--ACAGGCGAGCCCTCGTACGTCGAGTAGGTGCCCTGCTCACGCGCC 142969 Query 153306 AGTTCGCAGCTAGCC--TCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGA 153363 || ||||| | || | || || ||| | | ||| ||||| || ||| || || |||| Sbjct 142970 AGCTCGCA-CGAGGCGGTC-AGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGA 143027 Query 153364 GAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGAC 153423 | || || || |||| | |||| ||||||| || ||||| || ||||||| Sbjct 143028 GCTCGCGAGCCTCGGGCGACTCGAAGGGCAGGCGCAGCGCCAGGAAGGCATCAGCCAGAC 143087 Query 153424 CCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--AT 153481 |||| | || | ||||||||| | || | ||||||| | || ||| || | Sbjct 143088 CCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTGCTGTTGCGAGC-CTC-CTGGAC 143145 Query 153482 GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGC 153541 || |||| ||| ||||| || ||||| ||||| || || || || | || | | | Sbjct 143146 CGGGTAGTAGTTGACGTCGATGATCTTGTTAAGGTTACGAACGACAACCTGGGTCACCTC 143205 Query 153542 CTTAAGTTTCTCGAAATCATAGG-----TCATT-TCGTCGACGCGTACGCATCGATTCAC 153595 | || |||| ||| || |||| || || | ||||| || | || || Sbjct 143206 GTGGAGCTTCTGGAAGTCGTAGGCTCCCTCGTTGTAGTCGA----TAAACTGCG--GCAG 143259 Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCT 153654 || | |||||||| || || || ||| ||| || |||| || ||||| | ||||| Sbjct 143260 CGCCAGCGACGCCAGGTTGCACACAGCCACCTCGTCGGGCGCCG-AGTACTCGATGATCT 143318 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 ||| ||| |||||| || ||| ||||| || | ||| ||||| ||||| |||| Sbjct 143319 CGGTGCACAGGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGC 143378 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AA 153771 | ||| ||| | |||||| | || ||| |||||| || | |||| ||| | Sbjct 143379 AGTGGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 143438 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | |||||| | | || || |||||| | |||||| || Sbjct 143439 ACC---ACAGCTTCTGCGCCTTGAGCGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTCT 143495 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||| ||||| |||||||||||||| || |||||||| |||| | || | Sbjct 143496 CGTACAGAGCCTCGAACTCCTCGCCGTAGCAGTCCGCCAGGCCGGGGCACTCGTTGGGGC 143555 Query 153892 ACATCAGCGACCACATATCGTCGGCGTT------GACGCGTCGCATGAACAGATCCGGCA 153945 |||| |||| ||| |||| |||| || || ||||||||| ||||| | Sbjct 143556 ACATGAGCGTCCA------GTCGCCGTTCTTCTCAACCCGCTTCATGAACAGGTCCGGGA 143609 Query 153946 CCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTT 154002 ||| || || | ||||||||| || | |||||| ||| | ||||| Sbjct 143610 TCCACAGGGCCAGGAAGAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCG-- 143667 Query 154003 TCAGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCA 154061 ||| | || | || | | | | |||||||||||| || || | ||||| ||| | || Sbjct 143668 -CAGGTCGAGGAACTCGA-ACACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCG 143725 Query 154062 CCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACC 154118 || ||| || || ||||| ||||| | ||| || | ||||| || || |||| | Sbjct 143726 CCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGTGCCGTGTTGTTAAAAACACGCAGC 143785 Query 154119 ATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGC 154178 ||||| | | ||| | | |||||||||||| ||| | | ||| ||| || Sbjct 143786 ATGGGCACGATGCCATTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCACGA 143845 Query 154179 ACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCC 154238 | | || | ||| | ||| || || ||| | ||| || || || ||| Sbjct 143846 ATGCGGTGGATGTTGAGGCCGATACCACCGGCCATCTTGGAAATCATGGCACAGGTCTTG 143905 Query 154239 AGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACAC 154298 || || |||||| || |||||||| ||||| | | ||| | ||| ||||| || Sbjct 143906 AGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACGAGGAAGCACGATGAC 143965 Query 154299 ATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTT 154358 | || | | | || || || ||||| ||||| ||||| || | ||| | Sbjct 143966 AGCTGGGCCTGGGGAGTGCCGGCGTTGAAGAGAGTGGGTGAGGCGTGGGTGA--AGTACT 144023 Query 154359 TGGCTCATCATGCG---GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCG 154415 | |||| |||| | |||||| |||| || || || | ||||| |||||| Sbjct 144024 T-GCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCAATGTTGTCGCCCCAGATGCCG 144082 Query 154416 AGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAG 154475 | ||||| ||||||| ||||||||| || || ||| ||| | ||| | ||| | Sbjct 144083 ACAGCGACACGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCCGTCGAGCTTGAGC 144142 Query 154476 AGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGA 154535 || || || ||||| ||| | || || |||| ||| | || || | |||| Sbjct 144143 AGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAG 144202 Query 154536 GCGATGGCCGCATCGA 154551 ||||||||| |||| Sbjct 144203 ACGATGGCCGAGTCGA 144218 >seq50 Length=290317 Score = 120 bits (132), Expect = 3e-22 Identities = 344/522 (66%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | || || ||||| | ||||| |||||||||| | | | | | Sbjct 113095 GTCCCATGCATCCGTAAGAAGGCCGACTGGGCTCTGAAGTGGATTTCGGACAAGAAGTCG 113154 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| ||| | | ||||||||| |||||||| | || || ||| | Sbjct 113155 ACCTTTGCCTCGCGACTCATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGAGCC 113214 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 |||||| | ||||| | | || | | ||| | ||||||||||| || ||| |||| Sbjct 113215 TTTGCCTCTATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTTACCTTCTCCAAC 113274 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTAC 52559 ||| | || || || || || || |||||||| |||||||| ||||| || | || Sbjct 113275 GAGCTCATCTCTCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTTCTCCCAC 113334 Query 52560 AAGACGCGCGTGACC-GAAA--AATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616 | || | | | || | || || || ||| | || || ||| || || Sbjct 113335 ATGAAGAACAGGCCCAGCAAGCAAATGA--TCG---AGGA----GATCATCGTC---GAT 113382 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || ||||| | ||||| | || | || |||||| | ||||| || ||| Sbjct 113383 GCCGTCAAGATCGAGCAAGAGTTCCTGACCGAGGCCCTGCCGTGTGCTCTGCTCGGTATG 113442 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||| || | |||| ||||||||||||||||||| || || || |||| ||| Sbjct 113443 AACTCGAACCTCATGAAGCAGTACATCGAGTTTGTGGCAGACCGCCTCCTGGTTGCTCTC 113502 Query 52737 GGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 || | | ||| || || | ||| ||| || || || || ||| | ||||| || || Sbjct 113503 GGCAACGACAAGGT-CTACCGCGCATCCAACCCCTTCGATTTCATGGAGAACATCTCCCT 113561 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||||||||| ||||||||||| || |||||||| Sbjct 113562 GGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 113603 >seq1 Length=4491949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || ||||||||||| || || | | | Sbjct 3513359 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAA 3513300 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| || ||||| ||||| || || ||||| || ||||| ||| | || | || || Sbjct 3513299 GATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTC-CTGAATCTTCGACTTGACAT 3513241 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||||||||| | || | || || || ||||| || || Sbjct 3513240 TG-TCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTG 3513182 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 3513181 ACGAAGATTTGCAT 3513168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||| | Sbjct 3513850 CCACCACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGAC 3513791 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| || ||||| ||||||||||| Sbjct 3513790 AAGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 3513731 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | || |||| || || || Sbjct 3513730 ATGCCCTCTTTGTCCTGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGACT 3513671 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | ||||| ||||||| || || || || ||||||||| Sbjct 3513670 TCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 3513623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260867789840