Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq48 167 2e-36 seq50 129 6e-25 seq4 123 2e-23 seq1 109 5e-19 >seq48 Length=300044 Score = 167 bits (184), Expect = 2e-36 Identities = 1002/1567 (64%), Gaps = 75/1567 (5%) Strand=Plus/Plus Query 146034 CAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAA 146092 |||| || || ||| |||||| || || ||||||| ||||| |||||||||||||| | Sbjct 142662 CAAGCTCGACCAGGTCCTTGAGCAGCCACGGGTTGACGACCTGGAACTCGCCGGCGAGCA 142721 Query 146093 CGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 |||| | | | || | |||| ||| | |||||||| |||||||||| || || |||| Sbjct 142722 CGCGGCGCTGGTAGATGTTGGATGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCT 142781 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTT 146211 ||| ||| | || || |||||| |||||| |||| ||||| | ||| ||||| | | Sbjct 142782 GCGACGTGCTGGCTGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGCACACCGTGCTGCT 142841 Query 146212 TGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAG 146271 || || | || || ||| | ||| | | |||| || | || || | Sbjct 142842 TG-ATGTCGGCCTTGAGAGCCTCCCAGTCCCAGA---GCTCCGACGGCTTGACGTTCCAC 142897 Query 146272 TTGTCGTAATGCATAGTGCC--GCGGAACAGG-GGGCTATTCTCGTACGATTCATAAGGA 146328 ||||||| |||| | |||| ||| ||||| | || |||||||| | | ||| Sbjct 142898 ATGTCGTACTGCAGAATGCCCTGCGACACAGGCGAGC---CCTCGTACG-TCGAGTAGGT 142953 Query 146329 CCGTCGATCTTG-GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGC 146387 | | || | ||||| ||||| || ||| || | ||| |||||||| Sbjct 142954 GCCCTGCTCACGCGCCAGCTCGCACGAGGCGGTCAGGGCGGCGTGGTAGATGGTCTCAAA 143013 Query 146388 GATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAA 146446 |||| | ||||| |||| | ||||| ||| |||| | || || | Sbjct 143014 GATCTGCTTGTTGA-GCTCGCGAGCCTCGGGCGACTCGAAGGGCAGGCGCAGCGCCAGGA 143072 Query 146447 AGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-C 146505 |||| || || |||||||| | || | || | ||| | ||| | |||| ||||| | Sbjct 143073 AGGCATCAGCCAGACCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTGCTGTTGC 143132 Query 146506 GCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACA 146565 | | || | | ||| |||| |||| ||||||||||||||| || ||||| |||||| Sbjct 143133 GAGCCTCCTGGACCGGG-TAGTAGTTGACGTCGATGATCTTGTTAAGGTTACGAACGACA 143191 Query 146566 ATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTT--TTAGTTTTAACGTTGA 146620 | | |||| | || | ||| |||| | | | | ||| || || || Sbjct 143192 ACCTGGGTCACCTCGTGGAGCTTCTGGA---AGTCGTAGGCTCCCTCGTTGTA--GTCGA 143246 Query 146621 CGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGC--A 146678 ||| | || | || |||| ||| || || || |||||| | ||| | Sbjct 143247 TAAACTGCGGCAGCGCCAGCGACGCCAGGTTGCACACAGCCACCTCGTC--GGGCGCCGA 143304 Query 146679 ATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT 146738 |||| | ||||||| ||| |||||| || ||| |||||| || || ||||| Sbjct 143305 GTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTT 143364 Query 146739 ACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATT 146795 || ||| ||||||| |||||||||| |||||| | || || || ||| | Sbjct 143365 GCT---CTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTG 143421 Query 146796 GGTCTCGACGATGAATCTAAACAAATC-TCTG-GCCTTTACTTGTCTTTCGTACAGTTTA 146853 || ||||| |||| | | || | | |||| ||||| | ||||| || | | Sbjct 143422 GGCCTCGAGGATG--GCATACCACAGCTTCTGCGCCTTGA-GCGTCTTGCGGCCCTTGCC 143478 Query 146854 TTC-TTTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGG 146910 || ||||| |||||||||| || || || | ||||| ||| ||| Sbjct 143479 CTCACGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCG--CCGTAGCAGTCCGCCAGG 143536 Query 146911 CCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATA 146970 ||||| ||| ||||| || | |||| ||| || |||| || || || | ||| Sbjct 143537 CCGGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATG 143596 Query 146971 AACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCC 147030 |||| || || ||||| ||| |||| | | |||||| || | ||||| ||| Sbjct 143597 AACAGGTCCGGGATCCACAGGGCCAGGAAGAGGTCGCGGGCGCGGATCTCCTCCTTGCCG 143656 Query 147031 ATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCG 147090 ||| | || || ||||| ||| | | || | ||||| ||||||| ||| | Sbjct 143657 TGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCATGGCTCCAGGTAGATG 143716 Query 147091 GCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAG 147147 || | ||||| ||| || || ||||| ||||| | ||| || |||| || || Sbjct 143717 GCAAAAGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGTGCCGTGTTGTTAAAA 143776 Query 147148 ACTCGTAACATGGACACGAGGCCGCCGGA------TTTTGTGGTGCCGTTGTATTGAGCG 147201 || || | ||||| ||||| ||| ||| || ||| | || |||| |||| Sbjct 143777 ACACGCAGCATGGGCACGATGCCATTGGAGGTGCCGTTGGTGCCGGCGATGTA-GGAGCC 143835 Query 147202 C-TG------ACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGC 147254 | || | || || | | | || |||| ||| ||| ||| || ||||||| || Sbjct 143836 CGTGGCACGAATGCGGTGGATGTTGAGGCCGATACCACCGGCCATCTTGGAAATCATGGC 143895 Query 147255 GGA-CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGA 147313 | || || | ||| | |||||| || ||||||||||| ||||| ||| |||| Sbjct 143896 ACAGGTCTTG-AGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACGAGGA 143954 Query 147314 AACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCG 147373 | ||||| ||| |||| | ||||| || || || ||||| |||||| | Sbjct 143955 AGCACGATGACAGCTGGGCCTGGGGAGTGCCGGCGTTGAAGAGAGTGGGTGAGGCGTGGG 144014 Query 147374 TGA---ACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGC 147430 ||| || ||| | || ||| | | ||||| || | ||| | || || |||| Sbjct 144015 TGAAGTACTTGCTC-GA--CATGAGGTTGTACGTCTCGAGCACGCGCTCAATGTTGTCGC 144071 Query 147431 CGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCAT 147490 | ||| | | ||||| ||||||| |||||||||||| || || | ||| | | | Sbjct 144072 CCCAGATGCCGACAGCGACACGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCCGT 144131 Query 147491 TGACTTTTAATAGATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAG 147549 || || | || || | | | | ||| || ||||| |||||||||| ||||| | || Sbjct 144132 CGAGCTTGAGCAGGTA-CGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAG 144190 Query 147550 TCCCTGT 147556 |||| || Sbjct 144191 TCCCGGT 144197 >seq50 Length=290317 Score = 129 bits (142), Expect = 6e-25 Identities = 335/503 (67%), Gaps = 21/503 (4%) Strand=Plus/Plus Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTC-ACTCTGGCCGAACGTTT 47143 |||||||| ||||| |||||| ||| || | || ||| || | ||| || | Sbjct 113113 AAGGCCGACTGGGCTCTGAAGTGGATTTCGGACAAGAA-GTCGACCTTTGCCTCGCGACT 113171 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA 47203 || || |||||| ||||||||| |||||||| || |||||| | || || | Sbjct 113172 CATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCTATCTTCTG 113231 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 |||| | || | ||||||||||| || || ||||||||| ||||| | || Sbjct 113232 GCTGAAGAAGCGCGGCCTGATGCCCGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTGA 113291 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTACAACACTA-GA----GTCGAT 47315 || |||||||||||| |||||||||| ||||| || | ||| | || | | | Sbjct 113292 TGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTTCTCCCACATGAAGAACAGGCCCAG 113351 Query 47316 CAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG 47375 ||| | | || | || || || || | | ||| |||||| || ||| Sbjct 113352 CAA-----GCAAATG---ATCG--AG-GAGATCATCGTCGATGCCGTCAAGATCGAGCAA 113400 Query 47376 GAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGA 47435 ||||| | ||||||| ||||| || | | || |||||| || | | |||| Sbjct 113401 GAGTTCCTGACCGAGGCCCTGCCGTGTGCTCTGCTCGGTATGAACTCGAACCTCATGAAG 113460 Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTAC 47495 |||||||||| ||||| || |||||||| || ||| || | |||| | ||| Sbjct 113461 CAGTACATCGAGTTTGTGGCAGACCGCCTCCTGGTTGCTCTCGGCAACGACAAGGTCTAC 113520 Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555 | | | || || ||||| || ||| | ||||| || || | |||||||||||||| Sbjct 113521 CGCGCATCCAACCCCTTCGATTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTC 113580 Query 47556 TTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||||| ||||| || Sbjct 113581 TTCGAGAAGCGCGTGGGCGAGTA 113603 >seq4 Length=1956354 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||| || || || ||||||||| | Sbjct 192986 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGAC 193045 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||| |||||||| ||||| || Sbjct 193046 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 193105 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||||| | ||| || Sbjct 193106 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACC 193165 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| || || || || || || ||||||||| Sbjct 193166 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 193213 >seq1 Length=4491949 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||| || || || |||||||| | Sbjct 3513622 CCACCGCGCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3513563 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || ||||||| || ||||| || || || Sbjct 3513562 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGG 3513503 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| || | ||||| | |||||| Sbjct 3513502 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG-TCAATCGTGTCTGATGACTCGAC 3513444 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | || |||||||| ||||| || || || ||||||||| Sbjct 3513443 TTCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATG 3513395 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | || ||| ||| || || || |||||||| | Sbjct 3513359 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAA 3513300 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| ||||| || || |||||||||||| || ||| ||||| | Sbjct 3513299 GATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACATT 3513240 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||||| | ||| || || | ||| | || ||||| ||||| || || || Sbjct 3513239 GTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTGAC 3513180 Query 127102 AAAAATCTGCAT 127113 || || ||||| Sbjct 3513179 GAAGATTTGCAT 3513168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| ||||| |||||||| || | || || || || ||||| || || Sbjct 3513137 CGTGGACTCCTTTTGGATATTGTAGTCCGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCC 3513078 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | |||||||| |||||||| || |||||||||||| ||| || ||| Sbjct 3513077 GGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTT 3513018 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 || |||| |||| ||| || | | ||| || |||| ||| | || ||||| |||| Sbjct 3513017 GACGTTG-TCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCA 3512962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499331891280