Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq48 95.1 1e-14 >seq1 Length=4491949 Score = 100 bits (110), Expect = 3e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| || || || || ||||| ||||| || ||||| Sbjct 3513625 ATGCCACCGCGCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCC 3513566 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || || | ||||| |||||||||||||| Sbjct 3513565 GACAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGG 3513506 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || |||| || | || | ||||| || ||||| Sbjct 3513505 GGGATGCCCTCCTTGTCCTGAATCTTGCTCTTGA-CGTTGTCAATCGTGTCTGATGACTC 3513447 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||| || || | || |||||||| ||||| || || || || ||||| ||| || Sbjct 3513446 GACTTCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATGCCGCCAC 3513388 >seq48 Length=300044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 124098 GGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACT-GGAGCGT 124156 || ||| ||||||||||||||||||| | | ||| | | | ||||||| |||| | Sbjct 142917 GGCATTCTGCAGTACGACATGTGGAACGTCAAGCCGTCGGAGCTCTGGGACTGGGAGGCT 142858 Query 124157 TTTAAAACAACG-CATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGC 124215 | || | || ||| | ||||||| |||| ||||||||| | |||||| ||||| Sbjct 142857 CTCAAGGC--CGACATCAAGCAGCACGGTGTGCGCAACTCGCTGCTTGTGGCGCCCATGC 142800 Query 124216 CGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACA 124275 | || || | ||| | || || | || |||||||| | ||||||||| | ||| || Sbjct 142799 CCACAGCCAGCACGTCGCAGATCCTGGGCAACAACGAGTGCTTCGAGCCCTACACATCCA 142740 Query 124276 ATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 | | ||| ||| || ||| | |||||||| || || || Sbjct 142739 ACATCTACCAGCGCCGCGTGCTCGCCGGCGAGTTCCAGGT 142700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001804440120