Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq50 165 8e-36 seq4 134 1e-26 seq1 129 6e-25 >seq50 Length=290317 Score = 165 bits (182), Expect = 8e-36 Identities = 355/517 (69%), Gaps = 14/517 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || |||||||| ||||| || || || || || || | Sbjct 113622 CATGACACCAGCCTTCTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 113563 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 || ||| ||| | ||| ||||| |||||||||| || | |||| |||| |||| Sbjct 113562 CAGGGAGATGTTCTCCATGAAATCGAAGGGGTTGGATGCGCGGTAGACCTTGTCGTTGCC 113503 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || | || || || | ||| ||||| ||||||||||| ||| |||| | |||| Sbjct 113502 GAG-AG--CAACCAGGAGGCGGTCTGCCACAAACTCGATGTACTGCTTCATGAGGTTCG- 113447 Query 132767 AATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | || | || |||||| |||| |||||| || ||||| || || ||||||||| | Sbjct 113446 AGTTCATACCGAGCAGA-GCACACGGCAGGGCCTCGGTCAGGAACTCTTGCTCGATCTTG 113388 Query 132826 ACCGCGTCGGTGACGATTTCC-CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 || || ||| || ||| ||| | | | || ||| |||| | | || || Sbjct 113387 ACGGCATCGACGATGATCTCCTCGATCATTTGCTT-GCTGGGCCTGTTCTTCATGTGGGA 113329 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||| | | ||| ||||||||| |||| |||||| || | || ||||| |||||| Sbjct 113328 GAAGAGAAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAGATGAGCTCGTTGGA 113269 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| || | ||||||||| |||||||| || || ||||| || || | ||| || || Sbjct 113268 GAAGGTAAGGCCGGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATAGAGGCAAAGGCTCC 113209 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTT 133063 ||||||| ||||||||||| ||||| || | || ||| | | || || | ||| Sbjct 113208 GCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAATGAGTCGCGAGGCAAAGGTCGACTT 113149 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | ||| | ||||| ||| ||||| |||||||| Sbjct 113148 C-TTGTCCGAAATCCACTTCAGAGCCCAGTCGGCCTT 113113 Score = 163 bits (180), Expect = 3e-35 Identities = 202/276 (73%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||| || | || ||||| | ||||||||| ||| ||||| Sbjct 112542 GTAGGTGTCGATCAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAA 112483 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| ||||| ||||| ||| ||||| |||| || Sbjct 112482 TCCGTAGAAGCAACGGGCCTCGGGAACCTGGACTTCGCCGCTGAAGCGCTCCACCAAGTT 112423 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| || |||||| || ||||| || | || |||||| | Sbjct 112422 CTCGTTGACGATGCCATCCGAGGCGGCAAAGAAGGCGAGGATATGTGAGATGAAGTACTT 112363 Query 133347 CTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||||| | | | ||||||| | ||||||||||||||| | |||||| Sbjct 112362 CTCATCGTCGTTGAGCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAGGTCGATCTCCTC 112303 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| ||||| |||||||| || |||||||| Sbjct 112302 GGCTGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 112267 >seq4 Length=1956354 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | | | Sbjct 193212 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 193153 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 193152 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 193093 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||| || ||| |||||| Sbjct 193092 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 193033 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| |||||||| ||||||||||| || | || || Sbjct 193032 ATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 192986 >seq1 Length=4491949 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||||||||| |||| ||||| | || Sbjct 3513624 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCC 3513683 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | || |||| | |||| || |||| ||||||||||| ||||| | |||| Sbjct 3513684 GATACGATTGATAACG--TGAAGAGCAAGATCCAGGACAAAGAGGGCATTCCTCCGGACC 3513741 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||||||||| |||||||| || | |||||| | ||||||| Sbjct 3513742 AGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTACA 3513801 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || || |||| |||||| || | || || Sbjct 3513802 ACATCCAGAAGGAGTCGACTCTCCACCTGGTCCTGCGTCTGCGTGGTGG 3513850 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 |||||||| ||||||||| |||| || ||| | | || | | | | |||| | || Sbjct 3512964 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGACAACG-TCAAGTC 3513022 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| |||||||| || ||||||| ||||| ||||| | ||| ||||| Sbjct 3513023 CAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCCGGCAA 3513082 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| || ||||| |||||||| ||||||||||| | |||||||| Sbjct 3513083 GCAGCTTGAGGACGGCCGAACCCTTTCGGACTACAATATCCAAAAGGAGTCCACGCTGCA 3513142 Score = 102 bits (112), Expect = 8e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 3513396 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 3513455 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | |||| || || | ||||| ||||| || ||| | |||| Sbjct 3513456 GACACGATTGACAACG--TCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACC 3513513 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | |||||||| |||||||| || | |||||||| || |||| Sbjct 3513514 AGCAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGATTACA 3513573 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| ||| || || || ||||||| || || | || ||| Sbjct 3513574 ACATCCAGAAGGAGAGC-ACCCTCCACCTGGTGCTTCGCCTGCGCGGTGGC 3513623 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| || |||||| | || || ||| | | Sbjct 3513168 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCTTGGAGGTGGAGTCTTCG 3513227 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || || ||||||| Sbjct 3513228 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 3513287 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || || || || || | || || || |||||||||| Sbjct 3513288 CAGCGCCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGGACTCTTTCCGACTACAAC 3513347 Query 38424 ATCCAAAAGGA-AGCGACGCTGCA 38446 || || ||||| ||| || ||||| Sbjct 3513348 ATTCAGAAGGAGAGC-ACCCTGCA 3513370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171255716480