Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12 251 9e-62 seq1 143 3e-29 >seq12 Length=832401 Score = 251 bits (278), Expect = 9e-62 Identities = 433/626 (69%), Gaps = 6/626 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||| ||| || || || || |||| ||||| || || ||||| Sbjct 250657 TCAAAGTCCTCACCACCCAGGTGGGTGTCACCAGCAGTCGACTTGACCTCGAAAATACCC 250716 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | ||||||||| || ||||| ||||| || || ||||| || ||| Sbjct 250717 TCCTCAATGGTCAGGAGCGAAACATCGAAGGTACCGCCACCAAGATCGAAAATCAGGACG 250776 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || |||||||| |||||||| ||||| || ||||| || || || Sbjct 250777 TTGCGCTCGCCCTCGACCTTCTTATCCAGACCGTAGGCGATGGCAGCCGCGGTGGGCTCG 250836 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||||||||| || || | || || || || || || || Sbjct 250837 TTGATGATACGCAGGACGTTCAGGCCGGCGATCAGACCAGCGTCCTTGGTGGCCTGGCGC 250896 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || | ||| |||| | || | ||||| Sbjct 250897 TGGGAGTCGTTGAAGTAGGCGGGGACGGTGATGACAGCGTTGTTAACGGTGCCGCCGAGG 250956 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || ||||| || || | ||| || | | Sbjct 250957 TAGGACTCGGCCGTCTCGCGCATCTTGGTCAGGACCATGGACGAGACCTCCTCGGGGGTG 251016 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||||| ||| | || || || || || || || | || ||| || |||| || | Sbjct 251017 AACTGCTTCTTCTCGCCCTTGAACTCGACCTCGACCACGGGCTTG-CCGCCGCGCTCA-- 251073 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | | | ||||| ||| | ||||||| ||| ||||| | Sbjct 251074 ATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCGTCGCTGAACTTGCGG 251133 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| || ||||| || || || || ||||| ||||||||||||| |||||||| Sbjct 251134 CCGATCAGGCGCTTGGCGTCGAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTG 251193 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || |||||||| | || || || |||||| |||| ||||| || Sbjct 251194 GCGGCATCTCCAATGAGACGTTC---CGTGTCTGTGAAGGCGACGAACGACGGGGTTGTG 251250 Query 8057 CGATTCCCTTGGTCGTTCGCAATAAT 8082 || || || |||||||| || ||||| Sbjct 251251 CGGTTGCCCTGGTCGTTGGCGATAAT 251276 >seq1 Length=4491949 Score = 143 bits (158), Expect = 3e-29 Identities = 363/545 (67%), Gaps = 13/545 (2%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTA--TAGAAATCAACGCCGTCGTATAAC 7300 ||| |||||||| | ||||||||||| || | | ||| || |||||||| | | Sbjct 1455998 CAGCTCCTCAAACCTAGCACGGGTAATC--TGCAGGTTGAAGTCCTCGCCGTCGAAGAGG 1456055 Query 7301 GAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 || || || |||||||| || || || ||| | | | | || | ||| || ||||| | Sbjct 1456056 GAGTCGATCTCAATGGTGGTCTGGGCACCGTTGGACAGA--GTCCTCTTGGCACGCTCGC 1456113 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | | ||| |||||||| | | || || | || ||||| || | Sbjct 1456114 AAGCGGTCCTGAGCCTACGGAGGGCACGGGCATCGCCCGACAGGTCCTTCTTGGTCTTGC 1456173 Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | || || | | |||| |||| |||| | | |||||||| | ||||||| | Sbjct 1456174 GCTGGAAGTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGGCCACCCAGG 1456232 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || || || || | ||| || | ||||| | | |||| Sbjct 1456233 TGGGTGTCACCAGCGGTGGCCTTAACGGTGAAAACACCACCCTGGATGTTCAGGAGCGAA 1456292 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594 ||||| || ||||||||||||||||| |||| || ||||| || | ||| ||| Sbjct 1456293 ACATCGAATGTACCACCACCCAGGTCGTAAATCAGAACGTTGCGCTCCTTGTCCGACTTG 1456352 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| ||||| || || || || || || || || ||||| || | Sbjct 1456353 CCGGCACCCAGACCGTAGGCGATGGCAGCGGCAGTGGGCTCGTTGATGATACGGAGGACG 1456412 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||||| || | | || || || || | || || || ||||| ||||| Sbjct 1456413 TTCAGGCCAGAGATGGCGCCAGCGTCCTTGGTGGACTGACGCTGGTTGTCGTTGAAGTAA 1456472 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || | ||| || | | || ||||| || || | | || ||||| || Sbjct 1456473 GCCGGCACGGTGATGACGGCCTTCTCAACCTTCTTGCCAAGCTTGGCCTCGGCGATCTCC 1456532 Query 7775 TTCAT 7779 ||||| Sbjct 1456533 TTCAT 1456537 Score = 143 bits (158), Expect = 3e-29 Identities = 246/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| || ||||| | || ||||| || || || || ||| || |||| || Sbjct 3580576 TCGAAATCCTCGCCACCAAGATGGGTATCACCGGCAGTAGCCAGGACCTCGAAGACGCCG 3580517 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||||||||| || |||||||| || || || | | | | Sbjct 3580516 TTGTCGATCGACAGGAGCGAAACATCGAAAGTACCACCGCCAAGATCGTACACAACGATC 3580457 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | || | || | ||| || || |||||||||||||| ||||| || || ||| Sbjct 3580456 TGCTTCTCACCATCAGT---CTTGTCCAGGCCGTACGCGATAGCGGCCGCGGTGGGCTCA 3580400 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCG 7695 |||| ||||| ||| |||||| || ||||| | ||||| |||| || || || || | Sbjct 3580399 TTAACGATACGGAGAACGTTCAGACCGGCAAT-GATGCCGGCATCCTTGGTAGCCTGCCT 3580341 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| ||||||||||| || || ||||| |||| ||||| ||||| ||||| Sbjct 3580340 CTGGTTGTCGTTGAAGTAGGCCGGAACGGTGACGACGGCGTGGGTGACCTTCTTGCCGAG 3580281 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || |||| ||| ||||| ||| || | ||| | |||| ||| || Sbjct 3580280 GTAGGACTCGGCGACATCCTTCATCTTGCCCAGGATCATGGCGGAAACCTCCTC 3580227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130839027480