Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq4 102 5e-17 >seq1 Length=4491949 Score = 111 bits (122), Expect = 1e-19 Identities = 148/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| ||||| ||||| | || |||| || || || ||||| Sbjct 3513364 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGCTTTCCA 3513305 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || |||||||| |||| | ||||||||||| ||||||| ||| Sbjct 3513304 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCGACTTG 3513245 Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| | ||| | ||| || || | ||| || || || ||||| || Sbjct 3513244 AC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTCAG 3513189 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| |||||| Sbjct 3513188 GGTCTTGACGAAGATTTGCATA 3513167 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| || ||||| ||| | || |||| ||| Sbjct 3513604 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCCTCC 3513545 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | ||||||||||| | || | ||||||||||| | Sbjct 3513544 AGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 3513485 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || || | || ||||| || Sbjct 3513484 ATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTTG 3513425 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || ||||||||||| Sbjct 3513424 CCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | | | || |||| |||||||| || || || || Sbjct 3513814 TCCTTCTGGATGTTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAG 3513755 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||| ||||| ||||| || ||| Sbjct 3513754 ATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCCTGGATCTTGCTCTTCACGTTA 3513695 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || || |||| || ||||||||||| || | |||||||| Sbjct 3513694 TCAATCGTATCGGATGATTCGACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACG 3513635 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3513634 AAGATCTGCAT 3513624 >seq4 Length=1956354 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| || || || || | || |||| ||| Sbjct 193004 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCC 193063 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 193064 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 193123 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | |||| || | | ||| || || | ||| || || || Sbjct 193124 ATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTG 193183 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| |||||||| ||||||||||| Sbjct 193184 CCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632622751416