Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq4 96.9 3e-15 >seq1 Length=4491949 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || |||||||| || || || |||||||| || || | ||| Sbjct 3513613 AGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGA 3513554 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| |||| || || || |||| ||| | ||||||| Sbjct 3513553 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCC 3513494 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | ||||| | ||| || |||| ||| Sbjct 3513493 TTGTCCTGAATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTG 3513434 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || || || |||||||| Sbjct 3513433 ATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| || || ||| | ||| | || || | ||| Sbjct 3513370 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGC 3513311 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||| ||||| || || | || | ||||||||||| |||||| Sbjct 3513310 TTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTC 3513251 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||||||||||| || || || || |||||| Sbjct 3513250 GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTC 3513191 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || || ||||| Sbjct 3513190 AGGGTCTTGACGAAGATTTGCAT 3513168 >seq4 Length=1956354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||||||||| || || || |||||||| || || | || Sbjct 192995 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGG 193054 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| || || | ||| | ||||||| Sbjct 193055 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 193114 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||||||||| | || Sbjct 193115 TTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTG 193174 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || || |||||||| Sbjct 193175 ATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936453258781