Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq48 255 5e-63 seq1 131 2e-25 seq4 104 2e-17 >seq48 Length=300044 Score = 255 bits (282), Expect = 5e-63 Identities = 1029/1600 (64%), Gaps = 58/1600 (4%) Strand=Plus/Plus Query 138433 GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATC 138492 || |||||||| || |||||| ||| |||| | || || || ||| || | | Sbjct 142625 GCGATGATGCGGTTCTTCATGTTGTCGGACCACAGGCCAAGCTCGACCAGGTCCTTGAGC 142684 Query 138493 AGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTG 138552 || | ||| | |||||| || || ||||| | || || || ||| |||||| Sbjct 142685 AGCCACGGGTTGACGACCTGGAACTCGCCGGCGAGCACGCGGCGCTGGTAGATGTTGGAT 142744 Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | ||||| || | |||||||| ||||| ||||| | |||| | || || |||||| Sbjct 142745 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCTGTGGGCATG 142804 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCGTTCCTTGAGCGACGA 138671 |||||| | || || || || | |||||| ||||||| ||| ||||||| | | Sbjct 142805 GGCGCCACAAGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTCGG-CCTTGAGAGCCTC 142863 Query 138672 CCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----A 138727 ||||||||| | || || || ||||||||| |||||||| | || ||| | Sbjct 142864 CCAGTCCCAGAGCTCCGACGGCTTGACGTTCCACATGTCGTACTGCAGAATGCCCTGCGA 142923 Query 138728 AACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGC 138787 || ||| | || ||||||| ||| || ||| |||||| |||| | Sbjct 142924 CACAGGCGAG----CCCTCGTACGTCGAGTAGGTGCCCTGCTCACGCGCCAGCTCG---C 142976 Query 138788 TCGCCTCG---AGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGG 138844 || || || || | | ||| || || || ||||||| |||||| || | Sbjct 142977 ACGAGGCGGTCAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAG 143036 Query 138845 CCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGC 138904 |||||| |||| | |||| ||| ||| | ||| || || ||||| || ||||||| Sbjct 143037 CCTCGGGCGACTCGAAGGGCAGGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGCACGC 143096 Query 138905 CCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAA 138960 ||| |||| || | ||||||| || ||| ||||| || || || || || Sbjct 143097 CCAGGCCGATGGGCCTGTGGCGCATGTT----GCTGTTGCGAGCCTCCTGGACCGGGTAG 143152 Query 138961 TAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAAT 139020 ||||| || |||||||| ||||| | || || ||||| |||| ||| | | | | Sbjct 143153 TAGTTGACGTCGATGATCTTGTTAAGGTTACGAACGACAACCTGGGTCACCT-CGTGGAG 143211 Query 139021 CGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGT-CGACAAATTTGTTGACAC 139078 | | | || ||||| | ||| |||||| ||||| | | || || | || Sbjct 143212 CTTCTGGAAGTCGTAGGCTCCCTCGTTGTAGTCGATAAACTGCGGCAGC------GCCAG 143265 Query 139079 AAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGG 139138 ||| || | ||||||||| ||||| |||||||| | ||| |||| || |||| Sbjct 143266 ----CGACGCCAGGTTGCACACAGCCACCTCGTCGGGCGCCGAGTACTCGATGATCTCGG 143321 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 |||| || | || || || | || | || ||||| || ||||| || Sbjct 143322 TGCACAGGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGT 143381 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGA 139258 || ||||| ||||| | || ||||||| || || | ||| | ||| | Sbjct 143382 GGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC 143441 Query 139259 ACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCG 139314 ||| | | || | | ||| || | | | || ||||||||||| ||| Sbjct 143442 ACAGCTTCTGCGCCTTGAGCGTCTTGCGGCCCTTGC----CCTCACGCTCGTACTTCTCG 143497 Query 139315 TAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACAC 139374 || || | ||||| || |||||| ||| | || || | |||| || || ||| Sbjct 143498 TACAGAGCCTCGAACTCCTCGCCGTAGCAGTCCGCCAGGCCGGGGCACTCGTTGGGGCAC 143557 Query 139375 ATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAA 139434 ||||||| ||| |||||||| || || ||| |||||||||| ||||| ||||||| Sbjct 143558 ATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAACAGGTCCGGGATCCACAGG 143617 Query 139435 GCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGG 139494 || | | | ||||| || | || ||| || ||| || || ||| Sbjct 143618 GCCAGGAAGAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGG 143677 Query 139495 AAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---T 139551 || || || ||||| ||||||||||| ||||| |||||||| | ||||| || Sbjct 143678 AACTCGAACACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCGCCGGGGCGCTTG 143737 Query 139552 TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGA 139611 |||||||| || ||||| | ||| | | || || || || |||| ||| ||| | | Sbjct 143738 TTGCCACCCTGGTCGACATAGCGTGCCGTGTTGTTAAAAACACGCAGCATGGGCACGATG 143797 Query 139612 CCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGAGCTCGGACGTCATGT 139668 || | | || |||||||||| |||| ||| | || || || | | || Sbjct 143798 CCATTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTG---GCACGAATGCGGTGG 143854 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTC 139727 | |||| |||||| || ||| | | ||||| || | | || || | | || || Sbjct 143855 ATGTTGAGGCCGATACCACCGGCCATCTTGGAAATCATGGCACAGGTCTTG-AGGGTGTC 143913 Query 139728 GTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGG 139787 ||| ||||| ||||||||||||| ||| ||| || ||||| || || || || | Sbjct 143914 GTAGATACCATCGATGCTGTCGTCCTTCATGTCGACGAGGAAGCACGATGACAGCTGGGC 143973 Query 139788 TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACA 139846 | |||||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 143974 CTGGGGAGTGCCGGCGTTGAAGAGAGTGGGTGAGGCGTGGGTGAAGTACTTG-CTCGACA 144032 Query 139847 TCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTC 139906 | | | |||||| |||| ||| | |||| | || ||| ||||||| ||| | Sbjct 144033 TGAGGTTGTACGTCTCGAGCACGCGCTCAATGTTGTCGCCCCAGATGCCGACAGCGACAC 144092 Query 139907 GCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGT 139966 |||| | ||| || ||| || ||| | | | ||| |||| || ||| || | Sbjct 144093 GCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCCGTCGAGCTTGAGCAGGTACGAGC 144152 Query 139967 TCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| ||||||||| ||||||||||| |||||||| || Sbjct 144153 GCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 144192 >seq1 Length=4491949 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || ||||||||||| ||| | || Sbjct 3513624 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCC 3513683 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| |||||||| || || ||||| || || Sbjct 3513684 GATACGATTGATAACGTGAAGAGCAAGATCCAGGACAAAGAGGGCATTCCTCCGGACCAG 3513743 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || |||||||||||| | | | ||||||| || ||| Sbjct 3513744 CAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTACAAC 3513803 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| |||| |||| |||| || || Sbjct 3513804 ATCCAGAAGGAGTCGACTCTCCACCTGGTCCTGCGTCTGCGTGGTGG 3513850 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| ||||| || | | Sbjct 3513396 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 3513455 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 3513456 GACACGATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 3513515 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || || |||||||||||| | | | |||| ||||| ||| Sbjct 3513516 CAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGATTACAAC 3513575 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || ||| ||||| | || ||||||| ||| Sbjct 3513576 ATCCAGAAGGAGAGCACCCTCCACCTGGTGCTTCGCCTGCGCGGTGGC 3513623 >seq4 Length=1956354 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | | | Sbjct 193212 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 193153 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 193152 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 193093 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || |||||||||||| | | |||| ||||| ||| Sbjct 193092 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 193033 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || ||| ||||| |||| |||| || || || Sbjct 193032 ATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGG 192983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896210941160