Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq1 96.9 2e-15 >seq4 Length=1956354 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | ||||| || || |||||||| || || ||||||||||||| Sbjct 192984 CACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGG 193043 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| || || || || || |||| |||||||| || | | Sbjct 193044 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGG 193103 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || | | |||| ||| | |||||||| || ||| Sbjct 193104 GGATGCCCTCCTTGTCCTGGATCTT-GGACTTGACATTGTCGATCGTGTCGCTCGACTCC 193162 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 193163 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 >seq1 Length=4491949 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || |||||||| || || ||||||||||| || Sbjct 3513622 CCACCGCGCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3513563 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||||||| ||||| || | || Sbjct 3513562 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGG 3513503 Query 33643 ACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || || || || | ||| | ||||| ||| || | Sbjct 3513502 ATGCCCTCCTTGTCCTGAATCTTGCTCTT--GACGTTGTCAATCGTGTCTGATGACTCGA 3513445 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| || || || || | || || || ||||||||||| Sbjct 3513444 CTTCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703010498240