Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq48 228 8e-55 seq1 87.8 2e-12 >seq48 Length=300044 Score = 228 bits (252), Expect = 8e-55 Identities = 988/1538 (64%), Gaps = 41/1538 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || ||||| || | | || | ||| ||| | ||| Sbjct 142694 TTGACGACCTGGAACTCGCCGGCGAGCACGCGGCGCTGGTAGATGTTGGATGTGTAGGGC 142753 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| | || || |||||| |||||| Sbjct 142754 TCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCTGTGGGCATGGGCGCCACA 142813 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || |||| ||||| | ||||| | |||| | || | ||||||||| Sbjct 142814 AGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTCGGCCTTGAGAGCCTCCCAGTCCCAG 142873 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA--CTCCTCGACTGGCGGGAC 147130 | | ||| ||| | |||||||||||||||||||| || | | | |||| | || Sbjct 142874 AGCTCCGACGGCTTGACGTTCCACATGTCGTACTGCAGAATGCCCTGCGAC--ACAGGCG 142931 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGC-TGCGCCAATTCACAGCTTGCCTCGAGC 147189 ||| || |||| | |||| | || | || | |||||| || || || || Sbjct 142932 AGCCCTCGTACGTCGAGTAGGTGCCCT-GCTCACGCGCCAGCTCGCACGAGGCGGTCAGG 142990 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| ||||| || ||| || ||||| || || || || |||| Sbjct 142991 GCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCGGGCGACTCG 143050 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 | |||| ||||| || |||||||| |||| |||||| | || | |||||| || Sbjct 143051 AAGGGCAGGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGCACGCCCAGGCCGATGGGC 143110 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAA 147367 | || |||||| | | || || || | || |||| |||| || || | Sbjct 143111 CTGTGGCGCATGTTGCT--GTTGCGAGCCTCCTGGACCGGGTAGTAGTTGACGTCGATGA 143168 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAG 147427 ||||||| |||||||| || ||||| | || | | ||| |||| ||| || || | Sbjct 143169 TCTTGTTAAGGTTACGAACGACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAGG 143228 Query 147428 -TCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 |||| || | || | | || || || | |||||||| ||||| || ||| Sbjct 143229 CTCCCTCGTTGTAGTCG-ATAAACTGCGGCAGCGCCAGCGACGCCAGGTTGCACACAGCC 143287 Query 147487 GTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545 ||| || |||| || ||||| | ||| |||| |||||||||| || ||| Sbjct 143288 ACCTCGTCGGGCGCCG-AGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGAATGGT 143346 Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605 |||| || | ||| ||||| || || ||||| ||| ||| | |||||| | || Sbjct 143347 GCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTT 143406 Query 147606 GCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCG 147662 ||| |||||| || | || | ||| | ||| ||| | |||||| | | Sbjct 143407 GCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---ACAGCTTCTGCGCCTTGAGCGT 143463 Query 147663 CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTA 147722 || || |||||| |||||| |||||||| ||| ||||| |||||||| Sbjct 143464 CTTGCGGCCCTTGCCCTCACGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTA 143523 Query 147723 GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782 ||| || || |||||||| |||| | || ||||| |||| ||| | ||| | | Sbjct 143524 GCAGTCCGCCAGGCCGGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTC 143583 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA 147842 ||| || ||| ||||| ||||| | |||||| || | || ||||| || | Sbjct 143584 AACCCGCTTCATGAACAGGTCCGGGATCCACAGGGCCAGGAAGAGGTCGCGGGCGCGGAT 143643 Query 147843 ATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCC 147898 ||||| | || | ||||| || | | | || | | | | ||||||||||| Sbjct 143644 CTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCGAGGAACTCGA-ACACGTCGGCGTGCC 143699 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGC 147955 | || || | ||||| ||| | || || ||| || || ||||||||||||| || Sbjct 143700 ATGGCTCCAGGTAGATGGCAAAAGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACATAGC 143759 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | || |||||||||| || |||| |||||| | | ||| | | |||||||||||| Sbjct 143760 GTGCCGTGTTGTTAAAAACACGCAGCATGGGCACGATGCCATTGGAGGTGCCGTTGGTGC 143819 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075 ||| | | ||| ||| || | ||| | ||| | ||| || || ||| | Sbjct 143820 CGGCGATGTAGGAGCCCGTGGCACGAATGCGGTGGATGTTGAGGCCGATACCACCGGCCA 143879 Query 148076 ACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133 ||| || || || ||| | | | || |||||| || ||||||||||||| Sbjct 143880 TCTTGGAAAT--CATGGCACAGGTCTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTC 143937 Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || ||||| ||| || | | || || || ||| || Sbjct 143938 CTTCATGTCGACGAGGAAGCACGATGACAGCTGGGCCTGGGGAGTGCCGGCGTTGAAGAG 143997 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCG 148251 ||||| ||||| || || | || | || ||| | | |||||||| | || Sbjct 143998 AGTGGGTGAGGCGTGGGTGAAGTACTTGCTCGA--CATGAGGTTGTACGTCTCGAGCACG 144055 Query 148252 TCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311 || |||| |||||| ||||| | ||||| ||||||| ||||||||| || || Sbjct 144056 CGCTCAATGTTGTCGCCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGGGGGCGC 144115 Query 148312 TCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAA 148370 ||| | | |||| || || |||||| || || || ||||| ||| | ||||| Sbjct 144116 TCGACGATCTTG-CCGTCGAGCTTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAA 144174 Query 148371 GTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||| ||| | || || | || || ||||||||| Sbjct 144175 GTACTGGTAGTTGAAGTCCCGGTCATAGACGATGGCCG 144212 >seq1 Length=4491949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || ||||||||||| || ||| Sbjct 3513845 ACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGACAAGGT 3513786 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| || ||||| || || ||||| ||||| Sbjct 3513785 GCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCC 3513726 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || || || |||| | || | ||||||| | || ||||||| Sbjct 3513725 CTCTTTGTCCTGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGACTTCGAG 3513666 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||||| ||||||| || || | ||| ||||||||| Sbjct 3513665 CGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 3513623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609728462920