Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 152 5e-32 seq1 141 8e-29 seq10 87.8 2e-12 >seq4 Length=1956354 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||||| || ||||||||||||| | Sbjct 192986 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGAC 193045 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| ||||||||||| | || Sbjct 193046 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 193105 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||||||||| |||||| Sbjct 193106 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACC 193165 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || ||||| || |||||||| Sbjct 193166 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 >seq1 Length=4491949 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | || |||| || | || |||||| || |||||||| || | Sbjct 3513851 TCCACCACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGA 3513792 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 |||||| || | || ||||||||||| ||||| || |||| ||||||||||||| ||| Sbjct 3513791 CAAGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGG 3513732 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || || ||| |||||| |||||| ||||| | | | ||| ||| ||||| || Sbjct 3513731 AATGCCCTCTTTGTCCTGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGAC 3513672 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| || ||||| || ||||| || |||||||| Sbjct 3513671 TTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 3513624 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | || |||||||| || ||||||||||| | || ||| || | || || Sbjct 3513605 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCCTC 3513546 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| |||||||| ||||| || |||||||||| || | || |||||||||| Sbjct 3513545 CAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 3513486 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | |||||| || || || |||| |||||| || | Sbjct 3513485 AATCTTGCTCTTGA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCT 3513427 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | ||| || || || |||||||| Sbjct 3513426 TGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| |||| | || || | || || || ||||| || Sbjct 3513364 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGCTTTCCA 3513305 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | || | | |||||||||| ||||| ||| Sbjct 3513304 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCGACTTG 3513245 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||||| || |||||||||| ||||| || || ||||||| || Sbjct 3513244 ACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTCAGGGTC 3513185 Query 35720 TTCACAAATATCTGCAT 35736 || || || || ||||| Sbjct 3513184 TTGACGAAGATTTGCAT 3513168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| || ||||| || | | |||||| |||| || |||||||| || || || Sbjct 3513131 CTCCTTTTGGATATTGTAGTCCGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 3513072 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | | |||||||||| |||||| ||| | || Sbjct 3513071 GATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3513013 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | || || || |||||||| | ||||| || || ||||||| Sbjct 3513012 TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCA 3512962 >seq10 Length=1070767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || || ||||| |||| || || || |||| || |||||||| || || || | Sbjct 547405 CCTTCTGGATATTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAA 547464 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | | ||||||||||| | ||| | | |||||||||| |||||| ||||| | | Sbjct 547465 TGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGT 547524 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||||| ||||| || || || || | || ||||| | Sbjct 547525 CGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGA 547584 Query 35727 A 35727 | Sbjct 547585 A 547585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792208174760