Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq48 118 3e-21 >seq48 Length=300044 Score = 118 bits (130), Expect = 3e-21 Identities = 361/543 (66%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| | || ||| | ||||| || |||||| ||| ||||| ||||| || || ||| Sbjct 143799 GGCATCGTGCCCATGCTGCGTGTTTTTAACAACACGGCACGCTATGTCGACCAGGGTGGC 143740 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG- 255090 ||| ||||| || || || |||||||||||||||| |||||||||||| || || Sbjct 143739 AACAAGCGCCCCGGCGCTTTTGCCATCTACCTGGAGCCATGGCACGCCGAC-GTGTTCGA 143681 Query 255091 GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACAC 255150 ||| | ||| | | || ||||| |||||| | |||||||||| ||| | Sbjct 143680 GTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGCGACCTCTTCCT 143621 Query 255151 CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCC 255209 || | ||| | || ||||| ||| || || || | || ||| ||||| | Sbjct 143620 GGCCCTGTGGATCCCGGACCTGTTCATGAAGCGGGTTGAGAAGA-ACGGCGACTGGACGC 143562 Query 255210 TCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAAC 255269 ||||||| |||||| | ||||| || | |||| | || || ||||| || | Sbjct 143561 TCATGTGCCCCAACGAGTGCCCCGGCCTGGCGGACTGCTACGGCGAGGAGTTCGAGGCTC 143502 Query 255270 TGTATCTGGAGTACGAGCGTGCCGGC-CGGTTCG---TACGC-CAAGTGCCCGCGAAGAA 255324 |||| | |||||||||||| ||| || || |||| |||| ||| |||| Sbjct 143501 TGTACGAGAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACGCTCAAG-----GCGCAGAA 143447 Query 255325 GATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCAC 255382 | | ||| | | || | || | | ||| || || || | || ||| | || || Sbjct 143446 GCTGTGGTATGCCATCCT-CG-AGGCCCAGACCGAGACTGGCAACCCCTTCATGCTGTAC 143389 Query 255383 AAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAA 255441 || |||||| || |||| | | ||||| ||| || || || ||| |||| || Sbjct 143388 AAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATTCGCAGCTCCAA 143330 Query 255442 CCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGC 255501 ||||||||||||||| | | || || | | | |||||||| || |||||| |||| Sbjct 143329 CCTGTGCACCGAGATCATCGAGTACTCGGCGCCCGACGAGGTGGCTGTGTGCAACCTGGC 143270 Query 255502 GTC 255504 ||| Sbjct 143269 GTC 143267 Score = 114 bits (126), Expect = 4e-20 Identities = 339/510 (66%), Gaps = 32/510 (6%) Strand=Plus/Minus Query 256127 ATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACC 256186 ||| || ||||||| |||||||||||| | ||||||||||||| || |||||||| Sbjct 142845 ATCAAGCAGCACGGTGTGCGCAACTCGCTGCTTGTGGCGCCCATGCCCACAGCCAGCACG 142786 Query 256187 GCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGC 256246 | || |||||||| ||| || || |||| ||| || ||||| ||| | |||| Sbjct 142785 TCGCAGATCCTGGGCAACAACGAGTGCTTCGAGCCCTACACATCCAACATCTACCAGCGC 142726 Query 256247 CGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGA 256306 ||||| | | ||||||||||| || || |||| || || | | ||| |||| ||| Sbjct 142725 CGCGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCGTGGCTGCTCAAGGACCTGGT-CGA 142667 Query 256307 -CTCGGTCTGTGGAACGAGAAGATGCAACAACGCATAATTCGGGCCCGTGGG----TCGG 256361 || || |||||| ||| || ||| | | ||||| | ||| ||| ||| || Sbjct 142666 GCTTGGCCTGTGGTCCGACAACATGAAGAACCGCATCA-TCG---CCGAGGGCGGCTCCA 142611 Query 256362 TGCAGAACATTGAGCGCTTGCC---GTTCCGCTTGCGCGAGGTATACCGCACGGTATGGG 256418 | |||||||| | || | || | | | |||| | ||| ||||| |||| Sbjct 142610 TCCAGAACATCGCCAGCGTCCCCGAGGACACCAAGCGC---CTGTACAAGACGGTCTGGG 142554 Query 256419 AGATGCCGCAACGATTGTTGGTCGACTTGTGCGCAGCACGACAAC----CGTTTGTGGAT 256474 |||| |||| || | ||| | || ||||| |||| | | || | || Sbjct 142553 AGATCTCGCAGCGCACCGTCGTCCAGATG---GCAGC-CGACCGCGGCGCCTTCATCGAC 142498 Query 256475 CAGTCGCAAAGCCTCAACCTCTACTTTCCGGTGCCCAACTTTAAACGCTTGACCAACG-- 256532 |||||||| |||||| || || | | | ||||| | | || || | ||| Sbjct 142497 CAGTCGCAGTCGCTCAACATCCACATGCGCGAGCCCACC---ATGGGCAAGATC-ACGTC 142442 Query 256533 CA--CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCG 256590 || ||||| ||| ||| |||||| |||||||||||||||||||| ||||||| Sbjct 142441 CATGCACTTCGCCGGCTGGAAGCTCGGCCTCAAGACGGGCATGTACTACCTCCGCACCCA 142382 Query 256591 ACCAGCGGCCGACCCGATCCAATTCACCGT 256620 | || ||| | || ||||| |||||||| Sbjct 142381 GGCTGCCGCCCAGCCTATCCAGTTCACCGT 142352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588330973412915