Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq48 250 3e-61 seq3 82.4 9e-11 >seq48 Length=300044 Score = 250 bits (276), Expect = 3e-61 Identities = 1154/1807 (64%), Gaps = 37/1807 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| ||||||||||| || |||||||| | | ||||| || | Sbjct 142388 CGGAGGTAGTACATGCCCGTCTTGAGGCCGAGCTTCCAGCCGGCGAAGTGCATGGACGTG 142447 Query 117897 AACTTGGAGAGGGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | |||| | ||| || || | |||| || ||| | || || || |||||||| Sbjct 142448 ATCTTGCCCATGGTGGG-CTCGCGCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAA 142506 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 | || || || || ||||| | | || | | ||| ||||| || ||| | Sbjct 142507 GGCGCCGCGGTCGGCTGCCATCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTT 142566 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| ||| ||| | || || |||| |||| || |||||||| || ||| | Sbjct 142567 GTACAGGCGCTTGGTGTCCTCGGGGACGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGC 142626 Query 118076 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 118135 || ||| | | |||||| | | ||||| || |||| || || |||| | || Sbjct 142627 GATGATGCGGTTCTTCATGTTGTCGGACCACAGGCCAAGCTCGACCAGGTCCTTGAGCAG 142686 Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 | ||||| || ||||| || ||||| ||| | | | ||||| |||| || Sbjct 142687 CCACGGGTTGACGACCTGGAACTCGCCGGCGAGCACGCGGCGCTGGTAGATGTTGGATGT 142746 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 ||| ||||| |||||||| ||||| |||| ||| || | ||| ||||||||||||||| Sbjct 142747 GTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCTGTGGGCATGGG 142806 Query 118256 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 |||| || || ||| || | ||| | | | | ||| |||||||||| ||||| Sbjct 142807 CGCCACAAGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTCGGCCTTGAGAGCCTCCCA 142866 Query 118316 GTCGTAGTTGAGCT---TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 ||| | ||||| | || | | |||||| || |||| || || || || || Sbjct 142867 GTCCCA---GAGCTCCGACGGCTTGACGTTCCACATGTCGTACTGCAGAATGCCCTGCGA 142923 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432 | | ||||| ||||| | ||| || | ||||| | ||||| ||| | || Sbjct 142924 CACAGGCGAGCCCTCGTACGTCGAGTAGGTGCCCTGCTCACGCGCCAGCTCGCACGAGGC 142983 Query 118433 CTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTC 118492 ||||| ||||| || || || ||||| || | || | | |||||| Sbjct 142984 GGTCAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCGGG 143043 Query 118493 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 118552 || || || | || || | | || |||| || ||||| || || || ||||| Sbjct 143044 CGACTCGAAGGGCAGGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGCACGCCCAGGCC 143103 Query 118553 AATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATC 118612 || || | || | ||| || || ||||| || || || || | || || Sbjct 143104 GATGGGCCTGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTAGTTGACGTC 143163 Query 118613 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 118672 ||| | | | || || || |||||||| || | || || ||||| | | | || Sbjct 143164 GATGATCTTGTTAAGGTTACGAACGACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTC 143223 Query 118673 -AAAACTGCGAGTC-TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 118730 | || | || | | | || | ||| || || || | |||||||| || ||| Sbjct 143224 GTAGGCTCC--CTCGTTGTAGTCGATAAACTGCGGCAGCGCCAGCGACGCCAGGTTGCAC 143281 Query 118731 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA 118790 |||| ||| || | | |||||| || || || ||||||| ||| || || | Sbjct 143282 ACAGCCACCTCGTCGGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGA 143341 Query 118791 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 118850 |||||||||| |||||| || || ||| ||| || |||||||| |||||| | Sbjct 143342 ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAG 143401 Query 118851 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCAC 118909 || | || ||||| || |||| || ||| || || | ||| | | || || || | Sbjct 143402 GGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCACAGCTTCTGCGCCTTG--- 143458 Query 118910 AGTGGCGT-TGGCTC-GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCA 118967 || | | | ||| | ||||| ||||||||| ||| || || || ||||| || Sbjct 143459 AGCGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCG 143518 Query 118968 CCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCC 119027 || | || | || || || || | ||||| | ||| | ||| | || | Sbjct 143519 CCGTAGCAGTCCGCCAGGCCGGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTC 143578 Query 119028 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 119087 | |||||||||||||||||| ||||| |||||||| || ||| |||||| || || | Sbjct 143579 TTCTCAACCCGCTTCATGAACAGGTCCGGGATCCACAGGGCCAGGAAGAGGTCGCGGGCG 143638 Query 119088 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 119147 || || || | || || || |||| || | || || | | || |||||| Sbjct 143639 CGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGC 143698 Query 119148 CACGGTTCCAGGTACACCGCGATTGACCC------CTTACGACGACCAGCCTGGTTTACA 119201 || || |||||||| | || | | || ||| | | ||| |||||| ||| Sbjct 143699 CATGGCTCCAGGTAGATGGCAAAAGCGCCGGGGCGCTT--GTTG-CCACCCTGGTCGACA 143755 Query 119202 TACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTT 119261 || | || ||| |||||| ||||| ||||| || | ||| |||| ||| ||| || Sbjct 143756 TAGCGTGCCGTGTTGTTAAAAACACGCAGCATGGGCACGATGCCATTGGAGGTGCCGTTG 143815 Query 119262 GT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 119319 || || ||| || ||| | |||| | | |||||||| | || ||||| | Sbjct 143816 GTGCCGGCGATGTAGGAGCC--CGTGGCACGAATGCGGTGGATGTTGAGGCCGATACCAC 143873 Query 119320 CTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 119379 | ||| ||| || || || || | |||| || ||||||| |||||||| || Sbjct 143874 CGGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAGATACCATCGATGCTGT 143933 Query 119380 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT-GGGTGTACCAGCGTTG 119438 | |||| | ||| ||||||||| |||| || ||||| ||| || || |||||| Sbjct 143934 CGTCCTTCATGTCGACGAGGAAGCACGATGACAGCTG-GGCCTGGGGAGTGCCGGCGTTG 143992 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCA 119496 |||||||| |||| |||||| |||| || |||| ||||| || ||| ||||| | Sbjct 143993 AAGAGAGTGGGTGAGGCGTGGGTGAA-GTA-CTTGCTCGACATGAGGTTGTACGTCTCGA 144050 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556 ||| ||||| || || || |||| | ||| ||||| | ||||| |||| Sbjct 144051 GCACGCGCTCAATGTTGTCGCCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGGG 144110 Query 119557 GTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGAC 119616 | || | | | || |||||| | | ||||| ||||| |||||||| | Sbjct 144111 GGCGCTCGACGATCTTGCCGTCGAGCTTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGC 144170 Query 119617 CAAAATA 119623 |||| || Sbjct 144171 CAAAGTA 144177 >seq3 Length=2538176 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 180869 AGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGT 180928 ||||||| || | |||||||||||| || ||||| |||||||| | || || |||| Sbjct 2104000 AGATGTTGGTAAGCTTGGCACCGTAACCGTTGCGGCCACCAACGGTCTTCAGCTCCTTGT 2104059 Query 180929 CATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCT 180988 | |||||||| | || ||||||||||| || || | || || || | | | | || Sbjct 2104060 CGTCGTAGTTGGAACCAGTGAGGAGGTGGCCGAAAATCAGCTCCGGGATGTAGACCTTCT 2104119 Query 180989 CCTTTTCGTGCAT 181001 |||| |||||||| Sbjct 2104120 CCTTCTCGTGCAT 2104132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433290581320