Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq12 116 1e-20 seq1 96.9 1e-14 >seq12 Length=832401 Score = 116 bits (128), Expect = 1e-20 Identities = 216/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || || || || ||||| || || || ||||||| || || || || ||| Sbjct 250934 GCTGTCATCACCGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGACGCT 250875 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || || || || | || || || | || || || || ||||| || || || || Sbjct 250874 GGTCTGATCGCCGGCCTGAACGTCCTGCGTATCATCAACGAGCCCACCGCGGCTGCCATC 250815 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || ||||| | | || || || | || ||||| ||| | ||| Sbjct 250814 GCCTACGGTCTGGATAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATTTTCGATCTTGGT 250755 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || ||||| || ||||| || || || || |||| ||||| ||||| || || || | Sbjct 250754 GGCGGTACCTTCGATGTTTCGCTCCTGACCATTGAGGAGGGTATTTTCGAGGTCAAGTCG 250695 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || || ||||| || || ||||| || ||||| || | || || Sbjct 250694 ACTGCTGGTGACACCCACCTGGGTGGTGAGGACTTTGACAACCGTCTGGTCACCCACTTC 250635 Query 349910 GTTAAAGAATTTAAGCG 349926 || || || || ||||| Sbjct 250634 GTGAACGAGTTCAAGCG 250618 >seq1 Length=4491949 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||| || ||||| || || || Sbjct 3513398 CATGCCGCCACGGAGGCGGAGGACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTC 3513339 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || ||||| |||||||||||||| || || ||||| || || Sbjct 3513338 GGAAAGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGG 3513279 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || ||||| || || | || || | || Sbjct 3513278 CGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTC 3513219 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| || || || || || || || || ||||| Sbjct 3513218 CACCTCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3513168 Score = 87.8 bits (96), Expect = 5e-12 Identities = 181/269 (67%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || ||||| || || || |||| | || || || ||||| |||| |||| Sbjct 3580311 ACCGTTCCGGCCTACTTCAACGACAACCAGAGGCAGGCTACCAAGGATGCCGGCATCATT 3580370 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| | || ||||||| ||||| || || || || || || || Sbjct 3580371 GCCGGTCTGAACGTTCTCCGTATCGTTAATGAGCCCACCGCGGCCGCTATCGCGTACGGC 3580430 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || || ||| || || | || || | | ||| | || ||||||||| Sbjct 3580431 CTGGACAA---GACTGATGGTGAGAAGCAGATCGTTGTGTACGATCTTGGCGGTGGTACT 3580487 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || | | || | || | || || || || ||||| ||| Sbjct 3580488 TTCGATGTTTCGCTCCTGTCGATCGACAACGGCGTCTTCGAGGTCCTGGCTACTGCCGGT 3580547 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||| ||||||||||| || ||||| || Sbjct 3580548 GATACCCATCTTGGTGGCGAGGATTTCGA 3580576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249604693341