Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq48 320 2e-82 seq3 159 4e-34 >seq48 Length=300044 Score = 320 bits (354), Expect = 2e-82 Identities = 527/757 (70%), Gaps = 10/757 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||| || ||| || ||| || | ||||||||| Sbjct 144098 TCATGCGTGTCGCTGTCGGCATCTGGGGCGACAACATTGAGCGCGTGCTCGAGACGTACA 144039 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||||||| || |||||| | || || || |||||||| || | Sbjct 144038 ACCTCATGTCGAGC---AAGTACTTCACCCACGCCTCACCCACTCTCTTCAACGCCGGCA 143982 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | ||| |||| |||||||| || | |||||||| ||| ||||| | Sbjct 143981 CTCCCCAGGCCCAGCTGTCATCGTGCTTCCTCGTCGACATGAAGGACGACAGCATCGATG 143922 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || |||||| |||||| || |||||| | | ||||||||||| Sbjct 143921 GTATCTACGACACCCTCAAGACCTGTGCCATGATTTCCAAGATGGCCGGTGGTATCGGCC 143862 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || || | || | ||||| | ||| | ||| || || |||||| | | Sbjct 143861 TCAACA--TCCACCGCATTCGTGCCACGGGCTCCTACATCGCCGGCACCAACGGCACCTC 143804 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | |||| |||||||| ||||| || || || ||||||||||| || || ||| ||||||| Sbjct 143803 CAATGGCATCGTGCCCATGCTGCGTGTTTTTAACAACACGGCACGCTATGTCGACCAGGG 143744 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| |||||| || | || ||||||||||| ||||| |||||||||||| | | Sbjct 143743 TGGCAACAAGCGCCCCGGCGCTTTTGCCATCTACCTGGAGCCATGGCACGCCGACGTGTT 143684 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| ||||| ||||| ||| || || | || ||||| ||| ||| ||||| || Sbjct 143683 CGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGCGACCTCTT 143624 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 || |||||||| |||||||| |||||| | ||| |||||| ||| || ||| Sbjct 143623 CCTGGCCCTGTGGATCCCGGACCTGTTCATGAAGCGGGTTGAGAAGAACGGCGACTGGAC 143564 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || |||||||| ||||||||||||||||| || |||||| |||||||| | | Sbjct 143563 GCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCGGACTGCTACGGCGAGGAGTTCGAGGC 143504 Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847 |||| || ||||| | ||||| | |||| | ||||||||| || | Sbjct 143503 TCTGTACGAGAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACGCTCAAGGCGCAGAAGCT 143444 Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| |||| |||||| || |||| ||||| || | || | |||| |||||||| Sbjct 143443 GTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTGTACAAGGA 143384 Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||| |||||||||||||||||| | ||| Sbjct 143383 CCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGC 143347 Score = 161 bits (178), Expect = 1e-34 Identities = 555/847 (66%), Gaps = 24/847 (3%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| ||||| | ||||| ||| ||||| ||| | ||||| Sbjct 143223 GACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTCGTTCGTAACCTTAACAAGATCATC 143164 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || ||||||||| | | ||| ||||| |||| | || ||| |||||||| Sbjct 143163 GACGTCAACTACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACAGGCCCATC 143104 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | | | || || ||||| |||| || |||| || ||| | |||||||||| ||| Sbjct 143103 GGCCTGGGCGTGCAGGGTCTGGCTGATGCCTTCCTGGCGCTGCGCCTGCCCTTCGAGTCG 143044 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335 ||||| || | ||| || | ||||| || | ||||||| || || || Sbjct 143043 CCCGAGGCTCGCGAGCTCAACAAGCAGATCTTTGAGAC-CATCTACCACGCCGCCCTGAC 142985 Query 55336 GGAGTCGTGTCATCTGGCTA-TGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAG 55394 | ||||| | ||||| ||||| |||| |||||| ||||| | | ||||| | Sbjct 142984 CGCCTCGTGCGAGCTGGCGCGTGAGC-AGGGCACCTACTCGACGTACGAGGGCTCGCCTG 142926 Query 55395 CTGACA-AGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATGTT- 55446 || | |||| |||| |||| ||| | ||| | |||| || || | | | Sbjct 142925 -TGTCGCAGGGCATTCTGCAGTACGACATGTGGAACGTCAAGCCGTCGGAGCTCTGGGAC 142867 Query 55447 TGACAAGTTG--AAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCG 55504 || | | | ||| ||||| | | || | |||||||| ||||| |||||| Sbjct 142866 TGGGAGGCTCTCAAGGCCGACATCAAGCAGCACGGTGTGCGCAACTCGCTGCTTGTGGCG 142807 Query 55505 CCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTAC 55564 || ||||| || || ||| | |||||| |||||||||||||| |||||||| ||| Sbjct 142806 CCCATGCCCACAGCCAGCACGTCGCAGATCCTGGGCAACAACGAGTGCTTCGAGCCCTAC 142747 Query 55565 ACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCAC 55624 || |||||||||||| |||||| || || || ||||| | ||||| | Sbjct 142746 ACATCCAACATCTACCAGCGCCGCGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCGTGG 142687 Query 55625 CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--CGGATATTG 55682 || ||||||||||| || | | |||| | | || |||| || || | Sbjct 142686 CTGCTCAAGGACCTGGTCGAGCTTGGCCTGTGGTCCGACAACATGAAGAACCGCATCATC 142627 Query 55683 TGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCCTCTGCGTC-TCAAGGAGATTT 55739 || | || || ||| |||||| ||| || ||| | | | |||| | | Sbjct 142626 GCCG--AGGGCGGCTCCATCCAGAACATCGCCAGCGTCCCCGAGGACACCAAGCGCCTGT 142569 Query 55740 ACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTG 55799 || |||||| |||||||| | ||| | | | | ||| || || || || | Sbjct 142568 ACAAGACGGTCTGGGAGATCTCGCAGCGCACCGTCGTCCAGATGGCAGCCGACCGCGGCG 142509 Query 55800 CGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTTCACTGGCCAAG 55858 | | |||||||||||| ||||| || |||||| |||| | || || || ||| |||| Sbjct 142508 CCTTCATCGACCAGTCGCAGTCGCTCAACATCCACATGCGCGAGCCCACCA-TGGGCAAG 142450 Query 55859 TTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTG 55918 | | || |||||||| ||| |||||| || ||||||||||| |||||||| || Sbjct 142449 ATCACGTCCATGCACTTCGCCGGCTGGAAGCTCGGCCTCAAGACGGGCATGTACTACCTC 142390 Query 55919 CGGACCC 55925 || |||| Sbjct 142389 CGCACCC 142383 >seq3 Length=2538176 Score = 159 bits (176), Expect = 4e-34 Identities = 220/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| || |||||||| ||||| |||| ||| || ||||| ||||| || ||||| Sbjct 2102073 GGTGACAGACGAGTGAAGATGTATCGAGCGCTGGCGGCATCGGATCCACCGGCGAGACGA 2102132 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | ||||| ||||| | | ||||| |||||||| || |||||||| ||| Sbjct 2102133 GAACCGAAGTTACCACTGGGCTCGAGGCAGTTCACGTTGTTGGACCCGACAAAGTTCTGA 2102192 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||| | || ||| || || || ||||||| ||||| || || | ||| ||| Sbjct 2102193 GCCAGGCCGATAATGGTCTGCTGTAGCGAGACCTCACCGTGGTGGTAGGCGGCCTGTTCC 2102252 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAG 117532 | ||||| || |||| || | |||||| ||||| ||||||| |||| | Sbjct 2102253 GAGACGTAACCAGCCAACTCGACGACCTTCTTGTCTTTTACCAGGTTCCGTTTGAAACTC 2102312 Query 117533 GCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGC 117592 || | || ||||||||||| | |||||||| || || |||| ||||||||||||| Sbjct 2102313 GCGAAGATGACCTTGCGCTGTCCAGGCTTCAGGCCGTCGACCACCGAAGGGATCGAACGC 2102372 Query 117593 TTGATGTC 117600 || |||| Sbjct 2102373 ATGTTGTC 2102380 Score = 145 bits (160), Expect = 8e-30 Identities = 214/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 || ||| |||||||||||||| | |||||| ||||| ||||| || || || | || Sbjct 2102078 CAGACGAGTGAAGATGTATCGAGCGCTGGCGGCATCGGATCCACCGGCGAGACGAGAACC 2102137 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | ||| |||||||||| ||| | |||||||| || || || |||||||||| Sbjct 2102138 GAAGTTACCACTGGGCTCGAGGCAGTTCACGTTGTTGGACCCGACAAAGTTCTGAGCCAG 2102197 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | ||| || ||| || | ||||||||||| || || | ||| |||| || Sbjct 2102198 GCCGATAATGGTCTGCTGTAGCGAGACCTCACCGTGGTGGTAGGCGGCCTGTTCCGAGAC 2102257 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 ||| || ||||||| | |||||| |||| | ||||||| |||| || ||| | Sbjct 2102258 GTAACCAGCCAACTCGACGACCTTCTTGTCTTTTACCAGGTTCCGTTTGAAACTCGCGAA 2102317 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGAT 152321 || ||||||||||| || |||| ||||| ||||| ||| ||||||||| || | Sbjct 2102318 GATGACCTTGCGCTGTCCAGGCTTCAGGCCGTCGACCACCGAAGGGATCGAACGCATGTT 2102377 Query 152322 GTC 152324 ||| Sbjct 2102378 GTC 2102380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214310470600