Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq42 91.5 1e-13 >seq2 Length=2981670 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 || ||||| | |||||| | ||||||||| || ||| | || |||| || | |||| Sbjct 1776807 GGGAAGGGGCGGGGCTCGCGCTCGAGCTGGGTGCGCAGGGCGTCGACGTGGTCGACGTAG 1776866 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 ||||| ||||| |||| | |||| | | || || | || || | |||| || Sbjct 1776867 ACGTGGGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACGAGGTCGCAGGCGTGGGCG 1776926 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 | ||||| ||| || || |||||||| |||||||| ||||| || || || |||||||| Sbjct 1776927 AGCATGTGCGTCAGCAGCGAGTAGCTCGCGATGTTGAAGGGCACGCCCAGGCCCATGTCG 1776986 Query 30020 CCCGACCTCTGGTAGAGCTGACA 30042 | |||| |||||||||||| || Sbjct 1776987 CAGGACCGCTGGTAGAGCTGGCA 1777009 >seq42 Length=391249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/155 (75%), Gaps = 10/155 (6%) Strand=Plus/Minus Query 52760 CCCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACGTGCGGAGCC 52817 ||| ||| ||||||||||||| ||||| | ||||| |||||||| | ||| ||| | Sbjct 11082 CCCCGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCGT-CGGCATC 11025 Query 52818 GTCCTGACCCAGGAGGACATGCCCTTCGACAAGGAC---GGGGTGGTGCCCGACCTCATC 52874 || | ||||||||||||||| ||| | |||| || ||||||||||| ||||| Sbjct 11024 ATCGTCGACCAGGAGGACATGCCGTTCCA---GGACTCAGGCCTGGTGCCCGACATCATC 10968 Query 52875 ATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 || ||||| |||| || |||||| | ||||| || Sbjct 10967 ATGAACCCGCACGGTTTCCCCTCCCGAATGACGGT 10933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309176878724