Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 105 4e-18 seq4 91.5 9e-14 >seq1 Length=4491949 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| ||||| ||||||||||| || ||||| ||||| || || || || Sbjct 3513613 AGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGA 3513554 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || ||||| || |||||||| || | |||||| Sbjct 3513553 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCC 3513494 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | ||| |||||| ||| ||||||| || Sbjct 3513493 TTGTC-CTGAATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGT 3513435 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || || || || ||||||||| Sbjct 3513434 GATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATG 3513395 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||||||||||| |||||||| || || ||||| || || | || || ||||| Sbjct 3513370 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGC 3513311 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || ||||| || | ||||| ||||| ||||| | ||||||||||| Sbjct 3513310 TTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTC 3513261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| ||||||||| || || || || ||||| ||||| |||| ||||| || Sbjct 3513142 TGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAAAGGGTTCGGCCGTCCTCAAGCTGC 3513083 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | ||||| ||||| || || | |||||||||||| |||||| Sbjct 3513082 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 3513024 >seq4 Length=1956354 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || ||||||||||| || ||||| ||||| || || || || Sbjct 192995 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGG 193054 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||||| ||||| || || | |||||| Sbjct 193055 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 193114 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || || | || ||||| ||| |||||| || | || Sbjct 193115 TTGTCCTGGATC-TTGGACTTGACATTGTCGATCGTGTCGCTCG-ACTCCACCTCAAGGG 193172 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || || | || ||||| || ||||||||| Sbjct 193173 TGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 193213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728652565551