Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq4 114 1e-20 >seq1 Length=4491949 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || ||||| ||||||||| | || || || ||||| || | Sbjct 3513392 CGGCATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGCTGGAAGTCGAGTC 3513451 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| ||||||| | ||||| || ||||| ||||| || ||||| || || || Sbjct 3513452 ATCAGACACGATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGA 3513511 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || ||||| || | || ||||| || |||| || || ||| | || ||||| Sbjct 3513512 CCAGCAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGATTA 3513571 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||| ||| | || |||| | || |||| |||||||| Sbjct 3513572 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTGCTTCGCCTGCGCGGTGGCAT 3513625 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || || | || || || ||||| ||| | || Sbjct 3513623 CATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATC 3513682 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | || || || || || |||||||| ||||| || || || || Sbjct 3513683 CGATACGATTGATAACGTGAAGAGCAAGATCCAGGACAAAGAGGGCATTCCTCCGGACCA 3513742 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || |||| || | ||| | || || ||||| Sbjct 3513743 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTACAA 3513802 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 3513803 CATCCAGAAGGAGTCGACTCTCCACCTGGTCCTGCGTCTGCGTGGTGG 3513850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| |||| || | || ||||| | || Sbjct 3513168 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCTTGGAGGTGGAGTCTTCG 3513227 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || || || || ||||| || Sbjct 3513228 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 3513287 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || ||| | || || || ||| ||||||| |||||| Sbjct 3513288 CAGCGCCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGGACTCTTTCCGACTACAAC 3513347 Query 27168 ATTCAAAAGGAG 27179 ||||| |||||| Sbjct 3513348 ATTCAGAAGGAG 3513359 >seq4 Length=1956354 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| |||| || ||||| ||||| || Sbjct 193213 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAG 193154 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 193153 CGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 193094 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || |||| || | || | ||||||||||| Sbjct 193093 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAA 193034 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||| || | || |||| ||||| |||| ||||| Sbjct 193033 CATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 192986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917057189440