Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 174 4e-38 seq4 150 4e-31 seq10 125 2e-23 seq48 91.5 3e-13 >seq1 Length=4491949 Score = 174 bits (192), Expect = 4e-38 Identities = 159/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || |||||||| |||||||| || || |||| ||| Sbjct 3513164 TCCACGGAGGCGGAGGACGAGGTGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAAAG 3513105 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || ||||||||||| |||||||| ||||| || ||||| ||||| | Sbjct 3513104 GGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGAT 3513045 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || ||||| |||||||| ||||| || ||||| Sbjct 3513044 TCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTC 3512985 Query 211070 GAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| ||||| ||||| Sbjct 3512984 GAGGGTGATGGTCTTGCCCGT 3512964 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | | ||| | ||||| Sbjct 3513835 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGACAAGGTGCGGCCATCC 3513776 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| ||||||| || || |||||| Sbjct 3513775 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCC 3513716 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || || || || || ||| || ||||| ||||| || Sbjct 3513715 TGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGACTTCGAGCGTGATGGTT 3513656 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||||| || || | |||||| Sbjct 3513655 TTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 3513624 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| ||||||| ||||| | ||||| Sbjct 3513607 AGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCC 3513548 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | ||||| ||||| || || | || ||||||||| Sbjct 3513547 TCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3513488 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || ||||| || || || || || ||||| ||| Sbjct 3513487 TGAATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTC 3513428 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 3513427 TTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| ||| || || ||||| || || | ||| |||| ||||| Sbjct 3513379 AGGACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCC 3513320 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 3513319 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 3513260 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || || ||||| | ||||| ||| Sbjct 3513259 TGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTC 3513200 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | ||||| Sbjct 3513199 TTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3513168 >seq4 Length=1956354 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| ||||| | || || | ||||| Sbjct 193001 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCC 193060 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 193061 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 193120 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||| ||||| ||| || ||||| || ||||| Sbjct 193121 TGGATCTTGGACTTGACATTGTCGATCGTGTC---GCTCGACTCCACCTCAAGGGTGATA 193177 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 193178 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 >seq10 Length=1070767 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||| || || || | || |||| || || || ||||||||||| ||||| || Sbjct 547407 TTCTGGATATTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATG 547466 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| ||||| | || ||||||||||||||||| ||||| || ||| Sbjct 547467 AGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 547526 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| |||||||| ||||| || || || ||||| || || Sbjct 547527 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAA 547585 >seq48 Length=300044 Score = 91.5 bits (100), Expect = 3e-13 Identities = 184/270 (68%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | ||| | ||| || |||||| |||||||| | || Sbjct 143353 GTTCTTCTGGTTGCTCTTGCGGTTGC-AGTGG--TCCTTGTACAGCATGAAGGGGTTGCC 143409 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | || ||| |||| ||| || ||| |||| ||| || || ||||| Sbjct 143410 AGTCTCGGTCTGGGCCTCGAGGATGGCATACCACAGCTTCTGCGCCTTGAGCGTCTTGCG 143469 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | | || || ||| ||||||||| | ||| || ||||||| ||| || ||| || Sbjct 143470 GCCCTTGCCCTCACGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAGCAGTC 143529 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | || ||||| ||| |||||||| | ||| |||| | |||| | || || || Sbjct 143530 CGCCAGGCCGGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCG 143589 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 |||||||| ||||| | | |||| | ||| Sbjct 143590 CTTCATGAACAGGTCCGGGATCCACAGGGC 143619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148331646155