Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq1 96.9 3e-15 >seq4 Length=1956354 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||||||||| || || || || ||||||| || || || | || || Sbjct 193003 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTC 193062 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || || ||||||||||||| ||| | || ||| |||||| Sbjct 193063 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 193122 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||| |||||||||||||| || | |||||| | || Sbjct 193123 GATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTT 193182 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || ||||| ||||| Sbjct 193183 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 >seq1 Length=4491949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || |||| ||| || || | || || || || Sbjct 3513370 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGC 3513311 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || ||||||||||||| || | | ||| |||||| || ||| Sbjct 3513310 TTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTC 3513251 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||||| |||| |||||| | || |||||| Sbjct 3513250 GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTC 3513191 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| Sbjct 3513190 AGGGTCTTGACGAAGATTTGCAT 3513168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || |||||||| || || || || ||||| | || || || | Sbjct 3513611 GCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACC 3513552 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||||||||| || | ||| |||||||| | ||| | || ||| || Sbjct 3513551 ATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTT 3513492 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || || |||| ||| | | | ||| || ||||| || |||| ||||| Sbjct 3513491 GTCCTGAATCTTGCTCTTGA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGA 3513433 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || || ||||| ||||| Sbjct 3513432 TGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| ||||| ||||| || || | ||| ||||| |||| |||||||| Sbjct 3513142 TGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAAAGGGTTCGGCCGTCCTCAAGCTGC 3513083 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | | ||| |||||| ||| || Sbjct 3513082 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 3513023 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||||| |||||||| || | ||||| | || ||||| Sbjct 3513022 GACTTGA-CGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 3512964 Query 39261 CA 39262 || Sbjct 3512963 CA 3512962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544306933511