Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 107 4e-18 seq1 95.1 3e-14 >seq4 Length=1956354 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || |||||||||||||||| | || | ||||| || || || || ||||| Sbjct 193021 CTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAA 193080 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||| | | ||| || ||||| || || || || |||||| | Sbjct 193081 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 193140 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||| ||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 193141 GTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 193200 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 193201 GAAGATCTGCAT 193212 >seq1 Length=4491949 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || |||||||||||||| | | || | ||||| || || || || || || Sbjct 3513587 CTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAA 3513528 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| | | |||||||||| | ||| || ||||| || ||||| || ||||| | Sbjct 3513527 GATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTT 3513468 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | ||||||| ||| ||||| || || || || ||||| || |||||||| || Sbjct 3513467 GTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGAC 3513408 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 3513407 GAAGATCTGCAT 3513396 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| |||||||| ||||| || | | |||| Sbjct 3513158 GAGGCGGAGGACGAGGTGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAAAGGGTTCG 3513099 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||||||||| | | |||||| || Sbjct 3513098 GCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTC 3513039 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | | || ||| ||| || || || || Sbjct 3513038 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGT 3512979 Query 152066 AATAGTTTTGCCCGT 152080 || || |||||||| Sbjct 3512978 GATGGTCTTGCCCGT 3512964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| || | || || | ||||| Sbjct 3513835 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGACAAGGTGCGGCCATCC 3513776 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||||| | || || || || || Sbjct 3513775 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCC 3513716 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | | || || || ||||| || || || ||| Sbjct 3513715 TGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGACTTCGAGCGTGATGGTT 3513656 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||||||||||| |||||| Sbjct 3513655 TTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 3513624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817148517737