Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 141 2e-28 >seq1 Length=4491949 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || |||||| | |||||||| || ||| Sbjct 3513171 CAAATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCTTGGAGGTGGAGTCTTCGGAC 3513230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 3513231 ACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 3513290 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| || ||||| ||||| |||||||| |||| || ||| | Sbjct 3513291 CGCCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGGACTCTTTCCGACTACAACATT 3513350 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 3513351 CAGAAGGAGAGCACCCTGCACCTCGT 3513376 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||||||||| || || |||||||| |||||||| Sbjct 3512964 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGACAACGTCAAGTCC 3513023 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || || ||||||||||| || Sbjct 3513024 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAG 3513083 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || ||| | || || || ||||||| || || || ||||| Sbjct 3513084 CAGCTTGAGGACGGCCGAACCCTTTCGGACTACAATATCCAAAAGGAGTCCACGCTGCAC 3513143 Query 178125 CTTGT 178129 || || Sbjct 3513144 CTCGT 3513148 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || |||||||| ||||| ||||| || ||| || || Sbjct 3513627 CAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCCGAT 3513686 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| ||||||||||| || || |||||||||||||| Sbjct 3513687 ACGATTGATAACGTGAAGAGCAAGATCCAGGACAAAGAGGGCATTCCTCCGGACCAGCAG 3513746 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||||| || ||||| | || |||| | || || ||| | Sbjct 3513747 CGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCAC-CTTGTCAGACTACAACAT 3513805 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || || || || Sbjct 3513806 CCAGAAGGAGTCGACTCTCCACCTGGT 3513832 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || ||||| || || || || |||||| Sbjct 3513399 CAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCAGAC 3513458 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| |||||||||||| Sbjct 3513459 ACGATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAA 3513518 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || ||||| | || || | ||||| ||| || Sbjct 3513519 CGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGATTACAACATC 3513578 Query 178104 CAAAAAGA 178111 || || || Sbjct 3513579 CAGAAGGA 3513586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727390566918