Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 185 8e-42 seq1 143 2e-29 seq6 96.9 3e-15 seq10 91.5 1e-13 >seq4 Length=1956354 Score = 185 bits (204), Expect = 8e-42 Identities = 182/233 (78%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||| ||||| || ||| Sbjct 192983 CCACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCG 193042 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || || ||||||||||| ||||| ||||||||||| ||||| | | Sbjct 193043 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGG 193102 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | ||||||||||||| Sbjct 193103 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCGCTCGACT 193160 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 193161 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 193213 >seq1 Length=4491949 Score = 143 bits (158), Expect = 2e-29 Identities = 173/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | || || ||||| |||||||||||||||||||| |||||||| Sbjct 3513395 GCCGCCACGGAGGCGGAGGACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 3513336 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||| ||||| || || || ||||||||||| ||||| | || Sbjct 3513335 AAGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGG 3513276 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTC 41811 | | |||||||||| ||| | || | ||| || | || | ||||| ||||| Sbjct 3513275 GATACCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTGTCCGAAGACTC 3513219 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || |||||||| ||||| ||||| || ||||| Sbjct 3513218 CACCTCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3513168 Score = 141 bits (156), Expect = 9e-29 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || || |||||||||||||| ||||| || || || Sbjct 3513623 GCCACCGCGCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3513564 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| || || |||| || || ||||||| ||| Sbjct 3513563 CAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGG 3513504 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| | ||||| | ||| | | | ||||| ||||| Sbjct 3513503 GATGCCCTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCG 3513446 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||| || || || || || || ||||| ||||| ||||||||| Sbjct 3513445 ACTTCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATG 3513395 Score = 136 bits (150), Expect = 4e-27 Identities = 176/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 41627 ACATCACCG-CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||||||| | || || || ||||| | ||||| || || || ||||||||| ||||| Sbjct 3513860 ACATCACTGTCCACCACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTT 3513801 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||||| || | |||||| | || || ||||||||||| ||||| ||||||||||| || Sbjct 3513800 GTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTG 3513741 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGC 41804 ||||| |||| || ||| |||||| ||| || |||| ||| | | || ||| Sbjct 3513740 GTCCGGAGGAATGCCCTCTTTGTCCTGGATCTTGCTCTTC-ACGTTATCAATCGTATCGG 3513682 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || | ||| || ||||| || |||| ||||| ||||| ||||||||| Sbjct 3513681 ATGATTCGACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 3513623 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||||||| |||||| || || || ||||| || Sbjct 3513166 CCTCCACGGAGGCGGAGGACGAGGTGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAA 3513107 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| || |||||||| ||||| | || Sbjct 3513106 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 3513047 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | || || |||||||| Sbjct 3513046 ATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTATCAGAAGACTCCAC 3512988 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || ||||||| Sbjct 3512987 CTCGAGGGTGATGGTCTTGCCCGTCA 3512962 >seq6 Length=1553417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||||||||| ||||||| |||||| |||||| || ||| Sbjct 1406795 CGCATCGCGCCCCGGTCCGGCCTCGCGGCCAAGCACTTCATCGACACGGGCGCGGGCGTC 1406854 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | |||| | | ||||||||||||| ||| Sbjct 1406855 ATCGACGCCGACTACCGCGGCCAGGTCAAGGTGCTGCTCTTCAACCACGCCGA 1406907 >seq10 Length=1070767 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| || || |||||||| || || || |||| || ||||||||||| ||||| | Sbjct 547405 CCTTCTGGATATTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAA 547464 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||| ||||| | || | | |||||||||| ||| || |||| || | Sbjct 547465 TGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTC-ACATTG 547523 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||||| || || || || || || || ||||| ||| Sbjct 547524 TCGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACG 547583 Query 41852 AA 41853 || Sbjct 547584 AA 547585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302572636400