Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonsecaea_20nubica_20[genbank_20GCA_5F001646965.1_202016-05-18] 258 sequences; 33,787,447 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq185 102 6e-17 seq101 84.2 1e-11 >seq185 Length=319224 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| || || || || |||| Sbjct 78084 ATGCAGATCTTCGTCAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 78025 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| ||||| | || || ||||| Sbjct 78024 GACACCATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAAGGCATTCCCCCGGATCA 77966 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||||| ||||| | || || || |||| || || Sbjct 77965 ACAGCGTCTCATTTTCGCCGGCAAACAACTTGAAGATGGCCGTACCTTGAGCGACTATAA 77906 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 77905 CATCCAGAAGGAATCTAC 77888 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || ||||| || || ||||| || | | Sbjct 77628 ATGCAGATATTTGTCAAGACACTTACTGGCAAGACGATTACACTGGAAGTGGAAAGCTCA 77569 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || ||| | ||||| || ||| Sbjct 77568 GACACGATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAGGGTATTCCGCCCGACCAA 77509 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||||| | || |||||||||||||| |||| |||| ||| |||| | | || |||| Sbjct 77508 CAGCGACTGATCTTTGCCGGCAAACAGTTGGAGGACGGACGAACACTGTCG--GACTACA 77451 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAG 23842 |||| || || ||| ||| | || || || | || |||| ||||| |||| Sbjct 77450 ACATTCAGAAGGAGAGCACCCTGCACTTGGTGCTGAGACTGCGTGGAGG-TCAG 77398 >seq101 Length=409543 Score = 84.2 bits (92), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| || || ||||| ||||| || || || | ||||| | Sbjct 84765 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACGATC 84824 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || ||| ||||| ||||| | || || || || ||||| || Sbjct 84825 GACAATGTCAAGTC-CAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAGCAGCGATT 84883 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || |||||||| ||||| || || | ||||| | |||| ||||| || || || Sbjct 84884 GATCTTCGCCGGCAAGCAACTTGAGGATGGCCGCACCCTGAGCGACTACAATATCCAGAA 84943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008537171064