Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20asiaticum_20[genbank_20GCA_5F001717835.1_202016-08-31] 353 sequences; 36,384,952 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq338 98.7 7e-15 seq31 96.9 3e-14 >seq338 Length=218439 Score = 98.7 bits (108), Expect = 7e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | |||| || |||||||| |||||||||||| | ||||||||| Sbjct 124018 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 124077 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 || || |||||| |||| | || || | ||| |||| || ||||| |||| Sbjct 124078 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTC 124129 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | ||||||||||| |||||| | ||| |||| || | || ||| Sbjct 125461 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 125520 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| |||||||| ||||| || | | |||||| |||||||| Sbjct 125521 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 125567 >seq31 Length=487531 Score = 96.9 bits (106), Expect = 3e-14 Identities = 217/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205 |||| |||| |||||| || | ||| | | || ||||| || || ||||||||| Sbjct 339170 TTATGCTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGACGGTTGTCGAAATCTTCA 339229 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 || ||||| | ||| | || | |||| | || | ||| | || || |||| | Sbjct 339230 CCACCCAAGTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTA 339289 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | |||| ||||| ||| |||||||| | ||| || || || || || || Sbjct 339290 AGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACCC 339349 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 || || || |||||||| || |||| || ||||| || || || || || |||| Sbjct 339350 TCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCGG 339409 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||| || ||||| || || || ||||| || || ||||| | || || ||||| Sbjct 339410 AGAACGTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCTTGACGCTGAGAGTCGTTG 339469 Query 282446 AAATATGCAGGAACAGTAATAACGGC 282471 || || ||||| ||||| | ||| || Sbjct 339470 AAGTAGGCAGGGACAGTGACAACAGC 339495 Score = 89.7 bits (98), Expect = 4e-12 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| ||||| || || || || | ||||||| Sbjct 338343 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 338402 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| || || || || ||| | || ||| Sbjct 338403 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 338462 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 338463 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 338522 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || ||||| || ||||| | || | |||||||| ||||||||||| Sbjct 338523 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 338582 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| ||||| | ||| || | || | ||| | || | | || Sbjct 338583 GTCTCGATACCGAGAGAGAGAGGGGCGACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 338642 Query 281739 C-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | |||| || ||||| || || | ||| ||||| || |||||||| ||| Sbjct 338643 CTAGAGGTGTCACCAGAGAGGATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 338702 Query 281798 TCAGGATT 281805 ||||| || Sbjct 338703 TCAGGGTT 338710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740613069191778