Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20asiaticum_20[genbank_20GCA_5F001717835.1_202016-08-31] 353 sequences; 36,384,952 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq31 159 1e-33 seq328 122 3e-22 seq338 114 4e-20 seq219 105 2e-17 >seq31 Length=487531 Score = 159 bits (176), Expect = 1e-33 Identities = 441/671 (66%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 339840 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 339781 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 339780 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 339721 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 339720 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 339667 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || || Sbjct 339666 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGCCATC 339610 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 339609 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 339550 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | ||||| || || | | |||||| Sbjct 339549 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCTGTT 339490 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | ||||| || ||||| || || || | |||||| || || || ||||| || | Sbjct 339489 GTCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAAGCTACCAAGGATGCCGGTCTC 339430 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 339429 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 339370 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | ||| || || | || || || ||| | ||||||||| Sbjct 339369 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 339310 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | |||||| Sbjct 339309 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCT 339250 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| |||||||| || || ||||||||| || || ||||| Sbjct 339249 GGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGTCTCGTTAACCACTTCGTTAAC 339190 Query 349916 GAATTTAAGCG 349926 || || ||||| Sbjct 339189 GAGTTCAAGCG 339179 >seq328 Length=334975 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || ||||| ||||| || || || || | Sbjct 359 TTTGCATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 418 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || || || || | || ||||||| Sbjct 419 AGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 478 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || ||||| || || | || ||||| || || | || |||| Sbjct 479 CAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATG 538 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || |||| ||||| ||||| | || || || || |||||||| Sbjct 539 ACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 593 >seq338 Length=218439 Score = 114 bits (126), Expect = 4e-20 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281 |||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | || Sbjct 125547 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 125488 Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341 |||| |||| || |||||||| || || |||| ||||| |||| | | || |||| Sbjct 125487 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 125428 Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401 | || || | || | || |||| ||||| || || ||||||| | ||||||| Sbjct 125427 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 125368 Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458 || || ||| | ||||| || ||||| || || | ||||||| |||| |||| Sbjct 125367 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 125311 Query 378459 CATTTGAGCAATATT 378473 |||||| | ||| || Sbjct 125310 CATTTGCGAAATGTT 125296 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || |||||||| || || ||| || || | |||||||| || Sbjct 126341 ATTTCTTTGAGACGAGGCACACCCAAGGTGACGTTC---TTGGAAGACACACCAGCGAAA 126285 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | ||||||||||| ||||| || || | ||| Sbjct 126284 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 126225 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 ||||||||||| ||||| ||||| | ||| Sbjct 126224 CCAACCATTTCACCAGGGTTGACGAAAGC 126196 >seq219 Length=322996 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 33525 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 33584 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 33585 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 33644 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || ||||| | || || | || Sbjct 33645 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 33704 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 33705 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 33755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247546788459