Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20asiaticum_20[genbank_20GCA_5F001717835.1_202016-08-31] 353 sequences; 36,384,952 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq219 154 4e-32 seq337 140 8e-28 seq328 123 6e-23 seq9 84.2 5e-11 >seq219 Length=322996 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 33752 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 33693 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 33692 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 33633 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 33632 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 33573 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 33572 CAGAAGGAGTCCACCCTTCA-CTTG 33549 >seq337 Length=1491250 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || || |||||||| Sbjct 838272 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 838331 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| | Sbjct 838332 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 838391 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 838392 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 838451 >seq328 Length=334975 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || ||||||||||| || || ||| Sbjct 590 CAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCCGAC 531 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || |||||||| || ||||| Sbjct 530 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 471 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 470 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 411 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 410 CAGAAGGAGTCGACTCTCCACCTCGT 385 >seq9 Length=510024 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/263 (69%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| || |||||||| ||||| ||| || ||| ||||| |||||||| Sbjct 507610 CCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 507554 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238 |||| ||| || || |||||||| | ||| || | || ||||| | ||| Sbjct 507553 TTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGAC 507494 Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297 || | | ||| ||||| | ||||||||||| || |||| ||||||||| ||||| Sbjct 507493 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 507436 Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357 || ||| |||| || || ||||| ||||| | ||| |||||| || || || | Sbjct 507435 AGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTT-TCTC 507377 Query 214358 T-GACTCTTTTCATGAAAAGGTC 214379 | ||| | ||||||||||| || Sbjct 507376 TCGACACGCTTCATGAAAAGATC 507354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725755749482