Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20asiaticum_20[genbank_20GCA_5F001717845.1_202016-08-31] 265 sequences; 36,526,733 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq227 116 3e-21 seq92 104 2e-17 seq36 86.0 5e-12 >seq227 Length=372751 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| ||||| ||||| | || Sbjct 137339 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 137280 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||||||||| || || || || Sbjct 137279 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 137220 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | |||||| ||||||| | ||| |||||| Sbjct 137219 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 137160 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 137159 ATCCAGAAGGAGTCCACCCTTCACTTGGT 137131 >seq92 Length=1659281 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || | || || || || || | || Sbjct 963418 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCC 963359 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| || || || ||||| Sbjct 963358 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 963299 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | |||||| ||||||| ||||||| |||||| Sbjct 963298 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 963239 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 963238 ATCCAGAAGGAGTCGAC 963222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || || | || Sbjct 962909 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 962850 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| || || || ||||| Sbjct 962849 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 962790 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| || ||| ||||||| |||||| Sbjct 962789 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAAC 962730 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 962729 ATCCAGAAGGAATCAACC 962712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || || || || || || || | || ||||| || || | |||| || | ||| Sbjct 963125 GTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAGTCATCCGACACTATCGAC 963066 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | |||| || || || ||||||||||| || || || ||||| || || | || Sbjct 963065 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGATTGATT 963006 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || |||||||| ||| | |||||| ||||||| ||||||| ||||||||||| || || Sbjct 963005 TTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 962946 Query 22411 TCCAC 22415 || || Sbjct 962945 TCGAC 962941 >seq36 Length=1468341 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || | | || ||| | Sbjct 1090200 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 1090259 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || ||||| || || | Sbjct 1090260 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 1090319 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| ||| ||| ||||||| |||||||| || || Sbjct 1090320 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 1090379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726644409725