Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20asiaticum_20[genbank_20GCA_5F001717845.1_202016-08-31] 265 sequences; 36,526,733 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq92 132 5e-26 seq36 120 3e-22 seq227 102 9e-17 >seq92 Length=1659281 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || |||| |||||||||||||||||||| Sbjct 962719 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 962778 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 962779 ATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTG 962838 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | |||||||| ||||| || || || || || Sbjct 962839 TCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACG 962898 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 962899 AAGATTTGCAT 962909 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || |||||||||||||||||||| Sbjct 963227 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 963286 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 963287 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 963346 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | || || || ||||| |||| || || || Sbjct 963347 GTCGATGGTGTCGGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGAC 963406 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 963407 GAAGATCTGCAT 963418 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| | || || ||||||||||||||||| Sbjct 962946 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 963005 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | || |||||||||| |||||| ||||| ||| Sbjct 963006 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 963064 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | |||||| || || || || | || || || ||||| |||| Sbjct 963065 TGTCGATAGTGTCGGATGACTCGACCTCAAGGGTAATAGTCTTGCCAGTCA 963115 >seq36 Length=1468341 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || |||||||||||||||||||| | Sbjct 1090381 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1090322 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 1090321 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1090262 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 1090261 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1090202 Query 46584 A 46584 | Sbjct 1090201 A 1090201 >seq227 Length=372751 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || ||||||||||| || || || Sbjct 137148 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 137207 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 137208 GATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 137266 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 137267 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 137326 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 137327 CGAAAATCTGCAT 137339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236527647800