Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20asiaticum_20[genbank_20GCA_5F001717845.1_202016-08-31] 265 sequences; 36,526,733 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq227 154 4e-32 seq92 150 4e-31 seq36 140 8e-28 seq77 84.2 5e-11 >seq227 Length=372751 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 137336 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 137277 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 137276 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 137217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 137216 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 137157 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 137156 CAGAAGGAGTCCACCCTTCA-CTTG 137133 >seq92 Length=1659281 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || || |||||||||||||| || || ||| Sbjct 962906 CAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCCGAC 962847 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || |||||||| || ||||| Sbjct 962846 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 962787 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || |||||||| || || | || || |||| || ||| || Sbjct 962786 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATC 962727 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || || || || Sbjct 962726 CAGAAGGAATCAACCCTTCACCTGGT 962701 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || ||||||||||| || || ||| Sbjct 963415 CAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCCGAC 963356 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || |||||||| || ||||| Sbjct 963355 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 963296 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 963295 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 963236 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 963235 CAGAAGGAGTCGACTCTCCACCTCGT 963210 >seq36 Length=1468341 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || || |||||||| Sbjct 1090200 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 1090259 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| | Sbjct 1090260 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 1090319 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 1090320 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 1090379 >seq77 Length=567169 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/263 (69%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| || |||||||| ||||| ||| || ||| ||||| |||||||| Sbjct 564673 CCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 564617 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238 |||| ||| || || |||||||| | ||| || | || ||||| | ||| Sbjct 564616 TTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGAC 564557 Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297 || | | ||| ||||| | ||||||||||| || |||| ||||||||| ||||| Sbjct 564556 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 564499 Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357 || ||| |||| || || ||||| ||||| | ||| |||||| || || || | Sbjct 564498 AGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTT-TCTC 564440 Query 214358 T-GACTCTTTTCATGAAAAGGTC 214379 | ||| | ||||||||||| || Sbjct 564439 TCGACACGCTTCATGAAAAGATC 564417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727112956410