Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq66 176 5e-39 seq19 125 8e-24 >seq66 Length=1847925 Score = 176 bits (194), Expect = 5e-39 Identities = 631/979 (64%), Gaps = 22/979 (2%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 |||| || || || || ||||| || ||||||| || | || | || |||||| Sbjct 1062124 GCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCA 1062183 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| |||||| | |||||| || | || | || || ||||| |||||| Sbjct 1062184 GTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 1062243 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||||| ||||| ||||| || | || || || |||||| || | || || | | Sbjct 1062244 GCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATAC 1062303 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTA--TAGTG 53939 || | | ||||| || || ||| | ||| ||| || ||||| | | Sbjct 1062304 CAAAGCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCG 1062360 Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999 || | | |||||||| || || | | | | | ||||| || || | || | Sbjct 1062361 TAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGC 1062418 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 |||| | | ||||||||||| | || || || ||||| || || ||||| ||||| | Sbjct 1062419 ACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGA 1062478 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 | || | || || || | || | ||||| || || |||||| ||||| | Sbjct 1062479 GGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 1062538 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179 ||||| | | | ||||| ||||| || || | ||| || | | | | ||||| || | Sbjct 1062539 GGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCT 1062598 Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239 |||| || |||||||| | ||| | || ||||| || | || | | ||| |||| || Sbjct 1062599 TGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAA 1062658 Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 54297 ||| ||||||| ||| ||||| || | || ||| ||| ||||||| || | Sbjct 1062659 CACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGG 1062718 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 |||| ||||| || || || ||||| || || || | || || || | ||||| Sbjct 1062719 CATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATC 1062776 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 |||||| || || || || || ||| |||| | || | || || ||| | ||| | Sbjct 1062777 ATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGG 1062836 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 || || || || || || | ||| || ||||| || || || | || || | Sbjct 1062837 TTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACAT 1062896 Query 54478 TAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG----ATGAATTCCTACTGCGA 54533 || ||||| ||||| | | || |||| ||| | || || || | | | Sbjct 1062897 GAGGTTGTATGTCTCCAAGACACGCTCAATAT--CATCGCCCCAT--ATACCAATAGACA 1062952 Query 54534 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGG 54593 ||||||| | |||||||||||| | ||| || |||||| || || || || | ||| | Sbjct 1062953 CACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATG 1063012 Query 54594 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 54653 || ||||| || || || ||||| || | |||| || || || ||||| | ||| Sbjct 1063013 ATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGG 1063072 Query 54654 CTGAGTTGAGTTTATCCTT 54672 | |||| || | ||||| Sbjct 1063073 CAGAGTCTAGCTCTTCCTT 1063091 >seq19 Length=533231 Score = 125 bits (138), Expect = 8e-24 Identities = 365/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| || ||||| || | | || | |||||||| || || | Sbjct 112380 CAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 112321 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 112320 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 112261 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || || ||||||| || | || || | | | | |||| || Sbjct 112260 ATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 112201 Query 24312 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | || ||||| || ||||||||| | || || || || || | ||| || Sbjct 112200 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 112142 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||| ||| || | | || || | || || ||||| | || ||| | Sbjct 112141 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 112082 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || ||||| || || || ||||| ||||||||||| |||| |||||| | || Sbjct 112081 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 112022 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || | ||||| || ||| || || || || || || ||| || || Sbjct 112021 CTGGACCTCGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 111962 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 24607 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 111961 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 111902 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 111901 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 111842 Query 24668 TTTATACATATTCCAGAT 24685 || ||||| | |||||| Sbjct 111841 CTTGTACATTTGCCAGAT 111824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720984013840