Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19 248 9e-61 seq2 141 1e-28 seq3 134 1e-26 seq82 123 3e-23 >seq19 Length=533231 Score = 248 bits (274), Expect = 9e-61 Identities = 547/809 (68%), Gaps = 16/809 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || || Sbjct 111824 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAGGAGATTGATCTC 111883 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||| ||| | || ||| | |||||| |||||| Sbjct 111884 TCCAAGGATCTCCA-CGATTGGAACAACCGTCTGACCACTGACGAGCAGTTCTTCATCTC 111942 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| ||||| || || ||||| ||||||||||| || || ||||| Sbjct 111943 TCACATCCTTGCCTTCTTCGCTGCTTCTGATGGCATTGTCAACGAGAACCTAGTTGAGCG 112002 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | | ||||| || ||||||||||| || || ||| || Sbjct 112003 ATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATCATGAT 112062 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 |||||| | ||||| || | ||||| ||||| ||||| ||| | | || || Sbjct 112063 GGAGAATATTCACTCCGAGACCTATTCCCTGCTCATTGACACCTACATCAAGGAGC-CTG 112121 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | ||| || | | || ||||| | || || || || ||| || | |||||| Sbjct 112122 CCCA-GCGAACCTAC--CTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGG 112178 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| | || |||||| | || || | |||| | | | || ||||| | Sbjct 112179 CTGACTGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTG 112238 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| ||||||||||| ||||||| || || ||| |||| || ||||||| Sbjct 112239 CCTTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 112298 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || |||||||||||||| |||| ||| ||||||||||||||| | || |||| Sbjct 112299 AGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 112358 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | || || |||||||||||| | || | ||| | | || | ||| | Sbjct 112359 GCCTTCACACCGACTTTGCCTGCCTTCTTCACTCCCATCTCAAGGGCCGTGCTAGCAAGC 112418 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| | || || ||| |||| |||||| |||||||| || | Sbjct 112419 AGATGATCCAGGACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGG 112478 Query 117288 CGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | || || |||| ||||| || | |||| | | |||| ||| ||||| ||||| Sbjct 112479 CTCTCCCCTGTGC-CCTGCTTGGCATGAATTCCAACCTGATGAAGCAGTACATTGAGTTT 112537 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| | || || ||| || | | || ||| ||||| | | ||||| Sbjct 112538 GTCGCTGACCGTCTACTCGTCGCTCTCGGCAACGAGAAGGTTTACAAGGCCACAAACCCC 112597 Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 112598 TTCGACTTCATGGAGAACATCTCCCTTGG 112626 >seq2 Length=1436644 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 785652 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 785593 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||||| Sbjct 785592 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 785534 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || || | |||||||| | ||||||||| Sbjct 785533 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 785474 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 785473 CATCCAGAAGGAGTCCACTCTCCACCTGGT 785444 >seq3 Length=1379917 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| ||||||||| |||| || || | || Sbjct 687637 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 687578 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 687577 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 687518 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || || | ||||||||| || |||||| Sbjct 687517 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAAC 687458 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 687457 ATCCAGAAGGAGTCCACCCTCCATCTCGT 687429 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| | || |||||| | | | Sbjct 686899 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 686840 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 686839 GACACTATTGACAACG-TGAAGAGCAAGATTCAAGACAAGGAGGGTATCCCCCCTGACCA 686781 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| ||||| | | ||||||||| Sbjct 686780 GCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAA 686721 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 686720 CATCCAGAAGGAGTCTACCCTTCACCTTGT 686691 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| | || ||||| || |||| | | | Sbjct 687345 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCG 687286 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| || || | |||||||| || || Sbjct 687285 ACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCCTG 687227 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 687226 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAG 687167 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || |||| || ||||| || Sbjct 687166 GAATCCACACTTCATCTCGT 687147 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||||||||| | || ||||| | | Sbjct 687127 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 687068 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||| || || | ||||| Sbjct 687067 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAA 687008 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| ||||| || || || |||| || ||||| ||||||||| Sbjct 687007 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 686948 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || ||||| Sbjct 686947 ATTCAGAAGGAGTCAACTCTGCA 686925 >seq82 Length=1669964 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 1275063 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 1275122 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 1275123 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 1275182 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 1275183 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1275242 Query 40879 G 40879 | Sbjct 1275243 G 1275243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218665460080