Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq2 102 9e-17 seq82 96.9 4e-15 >seq3 Length=1379917 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||| ||||| ||||| |||| || || || |||| ||| Sbjct 686919 ACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCT 686978 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| || |||||||| ||||||| || | | |||||||||| | Sbjct 686979 AGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGG 687038 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | | | | ||||| || || || || | ||||||||||| Sbjct 687039 ATCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTT 687098 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 687099 CCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| || || || | || || |||||||| |||||||| Sbjct 687446 CTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 687505 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||||||| | || | || |||||||||| ||| | || | |||| Sbjct 687506 AATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGACAT 687564 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| ||||| || | ||||| | Sbjct 687565 TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 687624 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 687625 CGAAGATTTGCAT 687637 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||| || |||| || ||||||||||||||||| Sbjct 686708 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 686767 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||| | ||| | || | | ||| Sbjct 686768 GATAAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGT-CTTGAATCTTGCTCTTCACGT 686826 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||||| ||||| || || | ||||| || || || || || ||||| | Sbjct 686827 TGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGA 686886 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 686887 CGAAAATCTGCAT 686899 >seq2 Length=1436644 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || |||||||||||||| || Sbjct 785461 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 785520 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 785521 GATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 785579 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 785580 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 785639 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 785640 CGAAAATCTGCAT 785652 >seq82 Length=1669964 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||| || | || || ||||||||||||||||| | Sbjct 1275243 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 1275184 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 1275183 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1275124 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 1275123 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 1275064 Query 43174 A 43174 | Sbjct 1275063 A 1275063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817006739240