Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq2 89.7 3e-13 seq82 84.2 1e-11 >seq3 Length=1379917 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | ||| || ||||| |||||||||||| | Sbjct 686673 CCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 686732 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || |||| |||| |||||| || ||||| || || ||||||||||| ||| Sbjct 686733 AAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGG 686792 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||| | |||||||| Sbjct 686793 ATACCCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACC 686852 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || |||||||| || || || |||||||| Sbjct 686853 TCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| || ||||| ||||||||||| || Sbjct 686901 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 686960 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||||| ||||| || || ||||| |||||| || Sbjct 686961 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGA 687020 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | || ||||| Sbjct 687021 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACT 687080 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| ||||| || || || || ||||| ||||| Sbjct 687081 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || ||| | || || | ||||||||| |||||| Sbjct 687447 TCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAA 687506 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || ||||||||| ||||| ||| | || | Sbjct 687507 ATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 687566 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | |||||||| |||||||| | || || || Sbjct 687567 TCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 687626 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 687627 AAGATTTGCAT 687637 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| | || || | ||||||||| || || Sbjct 687164 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAA 687223 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| || | | ||||||||| ||||| ||| | | Sbjct 687224 GATCAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 687283 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| || ||||| || | |||||||| ||||| ||||| || || || Sbjct 687284 GTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 687343 >seq2 Length=1436644 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| |||||||||||| ||| ||| | || Sbjct 785441 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 785500 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || || ||||||||||| ||| | || ||||||||| Sbjct 785501 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 785560 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | ||||| || Sbjct 785561 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 785620 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || || |||||||| Sbjct 785621 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 785652 >seq82 Length=1669964 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| | || || | |||||| || ||||| || Sbjct 1275241 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1275182 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||| ||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 1275181 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1275122 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | || | || ||||| || | |||||||| ||||| || || || || || || Sbjct 1275121 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 1275063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071673192480