Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10]
83 sequences; 41,590,745 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 2e-17
seq2 89.7 3e-13
seq82 84.2 1e-11
>seq3
Length=1379917
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || || ||||| | ||| || ||||| |||||||||||| |
Sbjct 686673 CCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 686732
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || |||| |||| |||||| || ||||| || || ||||||||||| |||
Sbjct 686733 AAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGG 686792
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | ||| | ||||||||
Sbjct 686793 ATACCCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACC 686852
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || || || |||||||| || || || ||||||||
Sbjct 686853 TCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||| ||| | ||| || ||||| ||||||||||| ||
Sbjct 686901 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 686960
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | |||||||| ||||| || || ||||| |||||| ||
Sbjct 686961 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGA 687020
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | | || | || | || |||||
Sbjct 687021 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACT 687080
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||||||||| ||||| || || || || ||||| |||||
Sbjct 687081 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| |||||||| || || || ||| | || || | ||||||||| ||||||
Sbjct 687447 TCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAA 687506
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | ||||||||||| || | || ||||||||| ||||| ||| | || |
Sbjct 687507 ATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 687566
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | |||| || || || || | |||||||| |||||||| | || || ||
Sbjct 687567 TCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 687626
Query 34379 AAGATCTGCAT 34389
||||| |||||
Sbjct 687627 AAGATTTGCAT 687637
Score = 86.0 bits (94), Expect = 4e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || ||| | || || | ||||||||| || ||
Sbjct 687164 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAA 687223
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| || ||||||||||| || | | ||||||||| ||||| ||| | |
Sbjct 687224 GATCAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 687283
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | ||||| || ||||| || | |||||||| ||||| ||||| || || ||
Sbjct 687284 GTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 687343
>seq2
Length=1436644
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| || ||||| |||||||||||| ||| ||| | ||
Sbjct 785441 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 785500
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || || || || || ||||||||||| ||| | || |||||||||
Sbjct 785501 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 785560
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | |||| || || || || | ||||| ||
Sbjct 785561 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 785620
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || ||||| || || || || ||||||||
Sbjct 785621 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 785652
>seq82
Length=1669964
Score = 84.2 bits (92), Expect = 1e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || || | |||||| || ||||| ||
Sbjct 1275241 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1275182
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||| ||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 1275181 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1275122
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | || | || ||||| || | |||||||| ||||| || || || || || ||
Sbjct 1275121 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 1275063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071673192480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |