Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq66 300 1e-76 seq3 114 1e-20 seq2 100 3e-16 >seq66 Length=1847925 Score = 300 bits (332), Expect = 1e-76 Identities = 642/954 (67%), Gaps = 14/954 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || |||||| | || || || || Sbjct 1062130 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1062189 Query 23087 AGATTGCTACACTTT---ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 ||||| | | || || ||||| | || |||||||||| || || || || | | Sbjct 1062190 AGATT---AGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCA 1062246 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 |||||||| |||||| | || | || |||||| ||| | ||||| ||| || ||| Sbjct 1062247 TCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAA 1062306 Query 23204 ATAGTCTGAGCGTGAAC--ACGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 | |||| || | | || | || | | ||||| || ||| ||||||| | ||| Sbjct 1062307 AGCTTCTGGGCCTTGATGGACTTGCGACCCTTACCTTCCCTCT----CGTACTTCTCGTA 1062362 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| || ||||||| |||||||| || || || | | | || ||||| Sbjct 1062363 GAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACAT 1062422 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| ||||| | || || ||||| || |||| ||||| || || ||||| || || Sbjct 1062423 GAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGC 1062482 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| ||||||||||| |||||||| || ||| ||||||| | ||| | || Sbjct 1062483 CAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 1062542 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | ||||| || || |||| ||| || Sbjct 1062543 CTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTT 1062602 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 || |||||||| ||||| ||||| ||||||||| | || | |||||| || || | ||| Sbjct 1062603 ACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACC 1062662 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||||| | ||| || || | || || | || || | ||| | | Sbjct 1062663 GTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATT 1062722 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || || || || || ||||| || || || || || || ||||| Sbjct 1062723 GAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGAT 1062782 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || || ||||||||||| || | | |||||||| || ||||| | || | || || Sbjct 1062783 ACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGGTTGAGG 1062842 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| || || ||| || || || ||| | | ||||| || || Sbjct 1062843 GGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATGAGGTT 1062902 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || | | | ||||| || || || |||||| || | || ||||| || Sbjct 1062903 GTATGTCTCCAAGACACGCTCAATATCATCGCCCCATATACCAATAGACACACGCATGAT 1062962 Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 ||||| ||||| | ||||| | ||||| ||| |||| || ||||| || | || Sbjct 1062963 CATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAA 1063022 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || ||||| || | || | || ||||| |||| || ||||| || Sbjct 1063023 TGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCAGA 1063076 Score = 104 bits (114), Expect = 2e-17 Identities = 365/564 (65%), Gaps = 7/564 (1%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | | ||||| | | |||||||| || |||||||| Sbjct 1061208 CTGGTCGACAGTGAACTGGATAGGGGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCC 1061267 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||| | |||||| || || || || || | || || | || Sbjct 1061268 AGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATCGTGGG 1061327 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||||||||| || || ||||| ||||| || Sbjct 1061328 ATCCTTCATGTGAATGTTGAGGGACTGGGACTGATCGATGAAAGCACCTCGGTCGGCAGC 1061387 Query 22285 CATATTTATCAATGTA-CGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | ||| | ||| || || ||||| || |||||||| || | ||| | Sbjct 1061388 CATCTGGA-CAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGCCTTGACGT 1061446 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||| | || ||||||| | || || || || | Sbjct 1061447 CGGCAGGGATGTTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAATACGGTTCTTCA 1061506 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| |||||| || ||| || | ||| |||| || |||| || || | Sbjct 1061507 TGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTGACAACCT 1061566 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | ||||| || | | ||| ||||| |||||||||||||| ||| | || ||||| | | Sbjct 1061567 GGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACT 1061626 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| ||||| ||||| | ||| || || ||||| || || | || || || Sbjct 1061627 CGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGGAGCAGACTGT 1061686 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTG-AGCATCGACCAGTCCCACAGATCGGAC 22642 | | | ||||| | || | |||| | || || ||||||||| || ||||| Sbjct 1061687 TACGGATACCGTGAGTCTTAA-CATCCTCTCGAAGGCTCTCCCAGTCCCAAAGGTCGGAA 1061745 Query 22643 GGCGTCACATTGTCCCACATATCG 22666 ||| | || || |||||| ||| Sbjct 1061746 GGCTTGAC---GTTCCACATGTCG 1061766 >seq3 Length=1379917 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || |||||| | || || ||| | | Sbjct 686899 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 686840 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || |||||||| || | || || |||||| Sbjct 686839 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATCCCCCCTGACCAG 686780 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| | ||| ||||||| || ||| Sbjct 686779 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAC 686720 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||||| || || || |||| | |||||| Sbjct 686719 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGT 686672 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| |||| ||||| || |||||| |||| ||||| | || Sbjct 687638 CATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 687579 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 687578 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 687519 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 687518 GCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGA 687483 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| ||||| | || || || | || Sbjct 687127 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 687068 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || ||| || | | ||||||||| || | || |||||| Sbjct 687067 GACACCATCGACAATGTGAA---GAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGAC 687011 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||||| || || ||||||||||| || | || ||| || | || || Sbjct 687010 CAACAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTAC 686951 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || ||||| || |||| ||| | ||| | || |||| Sbjct 686950 AACATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGGTA 686899 >seq2 Length=1436644 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 785653 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 785594 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 785593 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 785534 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 785533 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 785474 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 785473 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 785441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765937517360