Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq66 158 2e-33 seq19 116 5e-21 >seq66 Length=1847925 Score = 158 bits (174), Expect = 2e-33 Identities = 455/696 (65%), Gaps = 12/696 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||||||||||| | || || || ||||| || Sbjct 1062402 AGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAA 1062461 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 || ||||| ||||| || || | || || || | | | ||||| || || Sbjct 1062462 AAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTG 1062521 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || || Sbjct 1062522 GTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGC 1062581 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || ||||| || |||||||| | ||| | || ||||| || | || Sbjct 1062582 AAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGAC 1062641 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| || |||||| ||| |||| |||||||| | || ||| ||| | Sbjct 1062642 ACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGT 1062701 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | |||| ||||| || || || ||||| || || || | || Sbjct 1062702 GGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCA 1062759 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | || |||||||| || || ||||| || || |||| | || | || Sbjct 1062760 CAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAG 1062819 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || ||| | ||| | ||| || || || || || | ||| || ||||| || || Sbjct 1062820 CATGAAGAAAGCTGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTG 1062879 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG---- 63754 || | || || | || ||||| ||||| | | || |||| ||| | Sbjct 1062880 AAGAACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGCTCAATAT--CATCGCCCC 1062937 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 || || || | | |||||||| | |||||||||||| | ||| ||||| ||| || Sbjct 1062938 AT--ATACCAATAGACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTC 1062995 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 || || | | ||| ||| ||||| || || || ||||| || | |||| || || Sbjct 1062996 AATCTTGAGGAGGTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATC 1063055 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || ||||| | ||| | || | |||| ||||| Sbjct 1063056 ACGGTCGTAGACAATGGCAGAGTCTAGCTCTTCCTT 1063091 >seq19 Length=533231 Score = 116 bits (128), Expect = 5e-21 Identities = 363/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| || ||||| || | | || | ||||| || || || | Sbjct 112380 CAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 112321 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || ||||| || || | ||| |||||| Sbjct 112320 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 112261 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||||| ||||||| || | | || | | | | |||| || Sbjct 112260 ATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 112201 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 112200 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 112142 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 112141 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 112082 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 112081 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 112022 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | ||||| || ||| || || || || || |||||| || || Sbjct 112021 CTGGACCTCGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 111962 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 111961 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 111902 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 111901 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 111842 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 111841 CTTGTACATTTGCCAGAT 111824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816946564240