Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq66 178 2e-39 seq19 116 5e-21 >seq66 Length=1847925 Score = 178 bits (196), Expect = 2e-39 Identities = 631/974 (65%), Gaps = 24/974 (2%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || || || ||||| || ||||||| || | || | || || |||||||| Sbjct 1062130 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1062189 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 || ||| | ||||| || | || | || || ||||| |||||| |||||| Sbjct 1062190 AGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCC 1062249 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || ||||| ||||| || | || || || |||| | || | || || | ||| | | Sbjct 1062250 TTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAA-G 1062308 Query 79801 ACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTA-TTGT-GTATAT 79854 || | ||||| || |||||| | ||| ||| || ||||| || | ||| | Sbjct 1062309 CTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAG 1062365 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | || ||||| || || | ||| | | ||||| || |||| || ||||| Sbjct 1062366 GGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATG 1062423 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | | ||||||||| | | || || || ||||| || || ||||| ||||| || || Sbjct 1062424 AGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCC 1062483 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 | || || || | || | |||||| || || |||||| ||||| |||||| Sbjct 1062484 AGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAAC 1062543 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||||| ||||| || || | ||| || || | | | || ||||| ||||| Sbjct 1062544 TCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTTA 1062603 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | ||| | || ||||| || | || | | ||| |||| || ||| Sbjct 1062604 CCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCG 1062663 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 80212 ||||||||||| ||||| || | || ||| ||| ||||||| || | |||| Sbjct 1062664 TTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTG 1062723 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 ||||| || || || ||||| || || || | || || || | |||||||||| Sbjct 1062724 --AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGA 1062781 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | || || ||||| || || |||| | || | || || ||| | ||| | || Sbjct 1062782 TACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGGTTGAG 1062841 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || || || || | ||| || ||||| || || || | || |||| || | Sbjct 1062842 GGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATGAGGT 1062901 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTG----ATGAATTCCTACCGCGACACGC 80448 |||| ||||| | | || |||| ||| | || || || | | |||||| Sbjct 1062902 TGTATGTCTCCAAGACACGCTCAATAT--CATCGCCCCAT--ATACCAATAGACACACGC 1062957 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | |||||||||||| | ||| || |||||| | || || | | ||| ||| Sbjct 1062958 ATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGC 1063017 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 ||||| || || || ||||| || | |||| || || || ||||| | ||| | ||| Sbjct 1063018 TCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCAGAG 1063077 Query 80569 TTGAGTTTATCCTT 80582 | || | ||||| Sbjct 1063078 TCTAGCTCTTCCTT 1063091 >seq19 Length=533231 Score = 116 bits (128), Expect = 5e-21 Identities = 363/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| || ||||| || | | || || |||||||| || || | Sbjct 112380 CAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 112321 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||||||||| || ||||| || ||||| ||||| | || |||||| Sbjct 112320 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 112261 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGT 50136 || || || || || || |||||||| || | | || | | | | |||| || Sbjct 112260 ATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 112201 Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 112200 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 112142 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 112141 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 112082 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 112081 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 112022 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | ||||| ||| ||| || || || || || || ||| || || Sbjct 112021 CTGGACCTCGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 111962 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCA 50432 || || || | | || || || | |||| | || | | || ||||| Sbjct 111961 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 111902 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 111901 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 111842 Query 50493 TTTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 111841 CTTGTACATTTGCCAGAT 111824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268054796120