Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq66 165 1e-35 >seq66 Length=1847925 Score = 165 bits (182), Expect = 1e-35 Identities = 625/965 (65%), Gaps = 28/965 (3%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTAT 71750 || ||||| || || || || ||||| || ||||||| || |||| || | || Sbjct 1062120 CAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGG---GGCACAGTACTCGAT 1062176 Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 || |||||||| |||||| | |||||| || | || | || || ||||| Sbjct 1062177 GATCTCAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCG 1062236 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 |||||| |||||||| ||||| || || || | || || || |||| | || | || Sbjct 1062237 GTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGAT 1062296 Query 71871 CGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGT 71926 || | ||| | | || | ||||| || |||| | ||| ||| || |||| Sbjct 1062297 GGCATACCAAA-GCTTCTGGGCCTTGATGGA---CTTGCGACCCTTACCTTCCCTCTCGT 1062352 Query 71927 A-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATT 71983 | || | ||| | | || ||||| || || | ||| | | | | ||||| || | Sbjct 1062353 ACTTCTCGTAGAGGGCC--TCAAACTCTTCACCGTA-GCAGTCGGCAAGACCAGGGCACT 1062409 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 | || || ||||| | | ||||||||| | | | || || ||||| || || |||| Sbjct 1062410 CGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAG 1062469 Query 72044 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 72103 | ||||| || || | || || || | || | |||||| || || |||||| Sbjct 1062470 GGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTC 1062529 Query 72104 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 ||||| |||||| | | | ||||| ||||| || || | ||| || || | | | | Sbjct 1062530 GGAGATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCAC 1062589 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 72223 | || || ||||| || |||||||| | ||| | || ||||| || | || | | || Sbjct 1062590 CAGGTCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCA 1062649 Query 72224 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 72283 | |||| || ||| ||||||| ||| ||||| || | || ||| ||| ||||||| | Sbjct 1062650 TAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGA 1062709 Query 72284 TAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 | || ||||| |||| || || || ||||| || || || | || || || Sbjct 1062710 TTCGGTGGGCATTGA--GACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTT 1062767 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 | ||||||||||| || || || || || ||| |||| | || | || || ||| Sbjct 1062768 GAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGA 1062827 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 | ||| | || || || || || || | ||| || ||||| || || || | || Sbjct 1062828 AAGCTGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTT 1062887 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCT 72519 |||| || ||||| ||||| | | || |||| ||| | ||| || Sbjct 1062888 GCTGGACATGAGGTTGTATGTCTCCAAGACACGCTCAATAT--CATCGCCCCATATACCA 1062945 Query 72520 ACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 72579 | | |||||||| | ||| |||||||| | ||| || |||||| | || || | Sbjct 1062946 ATAGACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGG 1063005 Query 72580 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 72639 | ||| ||| ||||| || || || ||||| || | |||| || || || ||||| Sbjct 1063006 AGGTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAG 1063065 Query 72640 ATAAT 72644 | ||| Sbjct 1063066 ACAAT 1063070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138503693080