Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10]
83 sequences; 41,590,745 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq66 168 8e-37
seq19 113 6e-20
>seq66
Length=1847925
Score = 168 bits (186), Expect = 8e-37
Identities = 634/984 (64%), Gaps = 24/984 (2%)
Strand=Plus/Plus
Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947
|| ||||| || || || || ||||| || ||||||| || | || | || ||
Sbjct 1062120 CAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGAT 1062179
Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007
||||||||| |||||| | ||| || || | || | || || ||||| |||
Sbjct 1062180 CTCAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 1062239
Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067
||| |||||||| ||||| ||||| || | || || || |||| | || | || ||
Sbjct 1062240 ACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGC 1062299
Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTA-- 63121
| ||| | | || | ||||| || || ||| | | | ||| || |||||
Sbjct 1062300 ATACCAAA-GCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACT 1062355
Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181
| ||| | | || ||||| || || | | | | | ||||| || || |
Sbjct 1062356 TCTCGTAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTT 1062413
Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241
|| ||||| | | ||||||||||| | || || || ||||| || || ||||| ||
Sbjct 1062414 GGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGAT 1062473
Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301
||| || || | || || || | || | ||||| || || |||||| ||
Sbjct 1062474 CCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAG 1062533
Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361
||| |||||| | | | ||||| ||||| || || | ||| || || | | | |||||
Sbjct 1062534 ATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGG 1062593
Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421
|| ||||| || |||||||| | ||| | || ||||| || | || | | ||| ||
Sbjct 1062594 TCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGG 1062653
Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--A 63479
|| || |||||| ||| |||| |||||||| | || ||| ||| ||||||| ||
Sbjct 1062654 AACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCG 1062713
Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539
| |||| ||||| || || || ||||| || || || | || || || |
Sbjct 1062714 GTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGG 1062771
Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599
|| ||||||||||| || ||||| || || |||| | || | || || ||| |
Sbjct 1062772 GTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGC 1062831
Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659
||| | || || || || || || | ||| || ||||| || || || | ||
Sbjct 1062832 TGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTG 1062891
Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG----ATGAATTCCTAC 63715
|| | || ||||| ||||| | | || |||| ||| | || || || |
Sbjct 1062892 GACATGAGGTTGTATGTCTCCAAGACACGCTCAATAT--CATCGCCCCAT--ATACCAAT 1062947
Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775
| |||||||| | |||||||||||| | ||| || |||||| || || || | |
Sbjct 1062948 AGACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAG 1063007
Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835
||| ||| ||||| || || || ||||| || | |||| || || || ||||| |
Sbjct 1063008 GTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGAC 1063067
Query 63836 AATAACCGAGTTGAGTTTATCCTT 63859
||| | |||| || | |||||
Sbjct 1063068 AATGGCAGAGTCTAGCTCTTCCTT 1063091
>seq19
Length=533231
Score = 113 bits (124), Expect = 6e-20
Identities = 362/558 (65%), Gaps = 8/558 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||| ||| || ||||| || | | || || |||||||| || || |
Sbjct 112380 CAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 112321
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| ||||||||||| || ||||| || ||||| || || | || ||||||
Sbjct 112320 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 112261
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480
|| || || || ||||| ||||||| || | | || | | | | |||| ||
Sbjct 112260 ATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 112201
Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| | || ||||| || ||||||||| | || || || || || | || ||
Sbjct 112200 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 112142
Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
||||| ||| || | | || || | || || || || | || ||| |
Sbjct 112141 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 112082
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659
|| || ||||| || || || || || ||||||||||| |||| |||||| | ||
Sbjct 112081 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 112022
Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719
||| || || | ||||| || | | || || || || || || ||| || ||
Sbjct 112021 CTGGACCTCGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 111962
Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 33776
|| || || | | || || || | | ||||| | || | | || |||||
Sbjct 111961 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 111902
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
||| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 111901 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 111842
Query 33837 TTTATACATGTTCCAGAT 33854
|| ||||| | ||||||
Sbjct 111841 CTTGTACATTTGCCAGAT 111824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946553692280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |