Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq66 168 8e-37 seq19 113 6e-20 >seq66 Length=1847925 Score = 168 bits (186), Expect = 8e-37 Identities = 634/984 (64%), Gaps = 24/984 (2%) Strand=Plus/Plus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||||| || || || || ||||| || ||||||| || | || | || || Sbjct 1062120 CAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGAT 1062179 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||||||||| |||||| | ||| || || | || | || || ||||| ||| Sbjct 1062180 CTCAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 1062239 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 ||| |||||||| ||||| ||||| || | || || || |||| | || | || || Sbjct 1062240 ACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGC 1062299 Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTA-- 63121 | ||| | | || | ||||| || || ||| | | | ||| || ||||| Sbjct 1062300 ATACCAAA-GCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACT 1062355 Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | ||| | | || ||||| || || | | | | | ||||| || || | Sbjct 1062356 TCTCGTAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTT 1062413 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 || ||||| | | ||||||||||| | || || || ||||| || || ||||| || Sbjct 1062414 GGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGAT 1062473 Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 ||| || || | || || || | || | ||||| || || |||||| || Sbjct 1062474 CCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAG 1062533 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 ||| |||||| | | | ||||| ||||| || || | ||| || || | | | ||||| Sbjct 1062534 ATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGG 1062593 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || ||||| || |||||||| | ||| | || ||||| || | || | | ||| || Sbjct 1062594 TCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGG 1062653 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--A 63479 || || |||||| ||| |||| |||||||| | || ||| ||| ||||||| || Sbjct 1062654 AACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCG 1062713 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 | |||| ||||| || || || ||||| || || || | || || || | Sbjct 1062714 GTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGG 1062771 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 || ||||||||||| || ||||| || || |||| | || | || || ||| | Sbjct 1062772 GTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGC 1062831 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| | || || || || || || | ||| || ||||| || || || | || Sbjct 1062832 TGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTG 1062891 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG----ATGAATTCCTAC 63715 || | || ||||| ||||| | | || |||| ||| | || || || | Sbjct 1062892 GACATGAGGTTGTATGTCTCCAAGACACGCTCAATAT--CATCGCCCCAT--ATACCAAT 1062947 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 | |||||||| | |||||||||||| | ||| || |||||| || || || | | Sbjct 1062948 AGACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAG 1063007 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 ||| ||| ||||| || || || ||||| || | |||| || || || ||||| | Sbjct 1063008 GTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGAC 1063067 Query 63836 AATAACCGAGTTGAGTTTATCCTT 63859 ||| | |||| || | ||||| Sbjct 1063068 AATGGCAGAGTCTAGCTCTTCCTT 1063091 >seq19 Length=533231 Score = 113 bits (124), Expect = 6e-20 Identities = 362/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| || ||||| || | | || || |||||||| || || | Sbjct 112380 CAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 112321 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || ||||| || || | || |||||| Sbjct 112320 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 112261 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || ||||| ||||||| || | | || | | | | |||| || Sbjct 112260 ATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 112201 Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 112200 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 112142 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 112141 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 112082 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 112081 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 112022 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | ||||| || | | || || || || || || ||| || || Sbjct 112021 CTGGACCTCGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 111962 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 33776 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 111961 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 111902 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 111901 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 111842 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 111841 CTTGTACATTTGCCAGAT 111824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946553692280