Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 125 1e-23 seq10 116 8e-21 seq55 109 1e-18 seq44 84.2 4e-11 >seq19 Length=533231 Score = 125 bits (138), Expect = 1e-23 Identities = 287/428 (67%), Gaps = 18/428 (4%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | || ||||| |||| Sbjct 112668 TGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCC 112609 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||||||||| ||||| ||| | ||| || || |||| | Sbjct 112608 ATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACGAGTAGA 112549 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || |||||||| | ||||| |||||| | || |||||||||| || | Sbjct 112548 CGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAATTCATGCCAAGCAGGGCA 112489 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTG-- 251779 || || | |||||| || ||| |||| || ||| || || | ||||| || Sbjct 112488 CAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCAT----CACAAATGAT 112433 Query 251780 --CCT---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCG 251832 ||| ||| ||| ||| || || || || || | |||| || || | Sbjct 112432 GTCCTGGATCATCTGCTTGCTAG-CACGGC----CCTTGAGATGGGAGTGAAGAAGGCAG 112378 Query 251833 CCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCA 251892 |||| | ||| || ||||| || ||| ||||| ||||||||| | || || Sbjct 112377 GCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCG 112318 Query 251893 GGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGA 251952 ||||| | ||||| ||| ||||||||||||| | | ||||| || ||| | | | Sbjct 112317 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 112258 Query 251953 CCCTCGAC 251960 |||||||| Sbjct 112257 CCCTCGAC 112250 >seq10 Length=882988 Score = 116 bits (128), Expect = 8e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || ||||||| |||||||| || ||| Sbjct 578685 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTATGGTGCCAAGATTCTTCTCAAC 578744 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 578745 CAGACCCATCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 578804 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 578805 GGAAAGTCCACTCTTATGCGCGCCATCAACAACGAACAGGTTG-AGGGTTTCCCCAAGCA 578863 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 |||||| | ||| || | || ||||||||| | |||||| Sbjct 578864 GGATGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTCC 578906 >seq55 Length=1899268 Score = 109 bits (120), Expect = 1e-18 Identities = 432/671 (64%), Gaps = 13/671 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || ||||| || ||||||||||| ||||||||||| || | || || || | | Sbjct 409577 AGTTGGATCTCTTTCTGGTGGTTGGAAAATGAAGCTGGCTCTAGCCCGAGCTATGTTGCA 409636 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||||||||| || || || || || || || ||||| | || ||||| | || Sbjct 409637 GCGTGCCGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 409696 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCT--GAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||| || | ||||| | || | | || ||||| |||||| Sbjct 409697 ATGGCTCGAGACCTATCT--CAAGTCTCACACCGATATCACCAGTCTTATTGTTTCTCAC 409754 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 ||||| || ||| | || ||| | ||| ||| ||||| |||| || |||| Sbjct 409755 GACTCCGGATTCTTGGACAACGTTACCACTGATATCTACCACTACGAGCCCAACAAGAAG 409814 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || | ||| ||||||||| |||||||| | ||||||||||| Sbjct 409815 CTGGCTTGTTACAAGGGCAACCTGAACGCTTTCGTTCAGATCCGCCCTGAGGCCAAGAGT 409874 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| |||| | | |||| | ||| | |||||| || || || || Sbjct 409875 TACTACACCCTGTCCGCCTCCACTGTTCAGTTCAAGTTCCCTCCTCCTGGTATTTTGACC 409934 Query 280053 GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 || ||| || | ||| || || || | | ||| |||||| | || || | Sbjct 409935 GGTGTCAAGTCTCAAACTCGTGCTATTATCCGCATGTCC--AACGTCTCATACGCCTACC 409992 Query 280111 CCAATGGCCCCAA--CATCT-TC-AGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 | |||| || || | ||| || || || ||| || || | | | ||| || Sbjct 409993 CTAATGCACCAAAGCCTTCTCTCGAGGAG-GTCTCCTGTCAACTGACCCTTTCCTCTCGT 410051 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| ||||||| ||||| ||||| || ||||| || || ||||| | || |||||| Sbjct 410052 GTTGCCATCATTGGCCCCAACGGTGCTGGCAAGTCGACACTTATCAAGCTGCTTACTGGC 410111 Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 |||||| || || || ||| |||||| || ||| | || || | |||| | Sbjct 410112 GAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCTAACCTCCGTATCGGTTACATT 410171 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| | | ||| | |||| ||| |||| | || |||||||| ||| || Sbjct 410172 AAGCAGCACGCCCTGGAGCACGTTGAGATGCACTTGGAGAAAACCCCTAACCAGTACCTT 410231 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 410232 CAGTGGCGTTA 410242 >seq44 Length=1921322 Score = 84.2 bits (92), Expect = 4e-11 Identities = 198/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGA-TGTGGA---GCGTTCTAT 218573 ||||||||| |||| ||||| ||||| ||| ||||| || | | | || || Sbjct 222969 GACTTCATCAACAAAGAGCTTATTCTCTTCA----GTATGGCTGACAACATGAGATCCAT 223024 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || ||| ||||||| ||||||| ||||| ||| | ||| ||| ||||| Sbjct 223025 CCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAA 223084 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | ||| |||| | || | ||||| | | | || ||||||||||| |||||| | Sbjct 223085 AAGAAACTTGGTCAAGGATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAAC 223144 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||| ||||||||| | ||| ||| ||||| ||||| | || ||| ||| Sbjct 223145 GGCGTACCACCACGGTGAGGCGTCTCTTCAGCAGACCATTATAGGCCTTGCTCAGAACTT 223204 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 ||| || |||||||| |||| || |||| || | || |||||||| || Sbjct 223205 TGTCGGTTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACT 223261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835706959803