Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq2 170 4e-37 seq82 152 9e-32 seq19 129 1e-24 seq10 122 2e-22 >seq3 Length=1379917 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || || ||||| || || || Sbjct 686901 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 686960 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || |||| ||||| || ||||| || |||| ||||||||||| ||| Sbjct 686961 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGA 687020 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||| || ||||||||||| | ||| || ||| Sbjct 687021 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACT 687080 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||||||||| || |||||||||||||| || ||||| Sbjct 687081 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || |||||||| || |||||||| ||||| ||| Sbjct 687411 CCACCACGGAGGCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 687470 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || || Sbjct 687471 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGG 687530 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||| ||||| | || || || Sbjct 687531 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 687590 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || | |||||||||||| || ||||| ||| Sbjct 687591 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGATG 687641 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || ||||| || || |||||||| || |||| | Sbjct 687129 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCG 687188 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || ||||| || ||| Sbjct 687189 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 687248 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| |||||||| || | || || || Sbjct 687249 ATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACC 687308 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || |||||||||||||||| Sbjct 687309 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 687345 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || |||||||| || ||| Sbjct 686673 CCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 686732 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 686733 AAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGG 686792 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||| ||| || || ||||| |||||| || Sbjct 686793 ATACCCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACC 686852 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 686853 TCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 >seq2 Length=1436644 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 785426 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 785485 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || ||| Sbjct 785486 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGA 785545 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 785546 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 785605 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || |||||||||||||||||||| |||||||| |||| Sbjct 785606 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGC 785657 >seq82 Length=1669964 Score = 152 bits (168), Expect = 9e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 1275241 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1275182 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 1275181 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1275122 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||||||||| Sbjct 1275121 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 1275063 >seq19 Length=533231 Score = 129 bits (142), Expect = 1e-24 Identities = 559/867 (64%), Gaps = 33/867 (4%) Strand=Plus/Minus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||||||||| || | || || |||||||||||||| |||||| | || Sbjct 112681 GACACCAGCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 112622 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC--GCCAAACTGCTTGGGGTAACCG 10055 ||| ||| |||||||||||| |||||||| ||| |||| ||| || ||| Sbjct 112621 GGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTAAAC--CTTCTCGTTGCCG 112564 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || || || | |||||||| || ||||| |||||||| ||||||||| || ||| Sbjct 112563 AGAGCGACGAGTAGACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAATTC 112504 Query 10116 ATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 ||||||| || | ||||||| || || | ||| |||| || ||| ||| || Sbjct 112503 ATGCCAAGCAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCA 112444 Query 10176 TCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || | |||| || | || | | | || || || ||| | || | Sbjct 112443 TCACAAATGATGTCCTGGATCATCTGCTTGCTAGCACGGC----CCTTGAGATGGGAGTG 112388 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 || || |||| | ||| |||||||| || || ||||| ||||||||| || Sbjct 112387 AAGAAGGCAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAA 112328 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 || |||||||||||| || || || |||||||| |||| | || | ||| Sbjct 112327 GGTCAAACCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 112268 Query 10352 GAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCG 10411 ||| | | |||||| ||| | |||| || || || | || |||| ||| | Sbjct 112267 GAAGAAGATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTC-CT 112209 Query 10412 CGAAAAGTAT--TTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGTCTCG 10466 | | || |||| |||||| | |||||||||| | |||||| || || || Sbjct 112208 TGTCCTGGATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGA-TGCAGGGAATGGTATCA 112150 Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526 | ||| | |||||| | | | |||| || |||| || | |||| ||||||| Sbjct 112149 ACAGCGTTGAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGG 112090 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGC 10585 || || |||| ||| | |||| | ||| | ||||||| ||| || || Sbjct 112089 GAATAGGTCTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCAT-CGAGC 112031 Query 10586 C-GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCCA 10643 | |||| || | ||| | | | || | | | | | |||||||| | || |||||| Sbjct 112030 CTCAGGGATCTG-GACCT-CGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCA 111973 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA-- 10701 || | || |||||| | |||||||| ||||||| |||| ||| | ||| Sbjct 111972 TCAGAAGCAGCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGA 111913 Query 10702 --GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 ||| || ||| || | ||||| | ||| | | |||||| | |||||||| Sbjct 111912 CGGTTGTT----CCAATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAA 111857 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTG 10786 || || |||||||||||||||| || Sbjct 111856 AGAAGCCTCGGCCTTCTTGTACATTTG 111830 >seq10 Length=882988 Score = 122 bits (134), Expect = 2e-22 Identities = 440/676 (65%), Gaps = 37/676 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| ||||||| ||||| || |||||| |||||| Sbjct 579694 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAGATGGTTATCGATATGGGCGAAAGCG 579635 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 579634 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 579575 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| ||||| || |||| |||||| ||||| ||||| || || Sbjct 579574 ATAAGCTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGATG 579515 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG---G 225217 ||| |||| || || || | ||| | | || ||||| ||| || | Sbjct 579514 ACGGCAATACGAGAGCCCAGAGAGCACTGGAAAGAGATGTCGCTGA---TCTGGGGCTTG 579458 Query 225218 CCAGTTT---GGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGTCC 225268 ||| |||| |||| || | |||| || ||| || | || Sbjct 579457 GAAGTACCGGGGTACTGGAAGGACATGTTGGTGGCACGGAG------GATAGCCTTGGCC 579404 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | |||||| ||||| |||||||| ||||| ||| || | | || Sbjct 579403 TTGGTCTTGACACCCTCAAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGACTCA 579344 Query 225329 TTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || ||||||||||| |||| |||| || || ||||| |||| |||||| Sbjct 579343 CCAAGCTCGTAGTAAGACTTGGCAGAG--GGGTTGCGG-GCGACGAAGGCAGCCAGGTTA 579287 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || || | ||||||||| || |||||| ||||| || ||| | ||| || Sbjct 579286 CCTCTGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAGACGTT 579231 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGA 225503 ||| ||||| ||||||||||| || || |||||||| | ||| | || | ||||| Sbjct 579230 GTCGAGGAAACCAGAGTCGTGAGAGACGATGATGGAAGTACAAG--CG--GAGTTCTTGA 579175 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| |||||| ||||| | || |||| ||||| ||||| ||||| |||| Sbjct 579174 GGTAATCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAA 579115 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 |||| || || | | | || || ||| || |||| ||||||||| ||||| || | Sbjct 579114 GCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCAC 579055 Query 225624 CGGACAGGGAGCCGAT 225639 | || |||| || ||| Sbjct 579054 CAGAGAGGGCGCTGAT 579039 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225772 GTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAG 225831 ||||| |||||| || ||| | || ||| || || | | |||||| ||||| | Sbjct 578903 GTCAAGGTCGTGCTCGACGAAGACGGTCTTGACCTCATCCTGCTTGGGGAAACCCTCAAC 578844 Query 225832 CTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAG 225891 ||| | || || || || | || || ||| || | |||||||||||| || Sbjct 578843 CTGTTCGTTGTTGATGGCGCGCATAAGAGTGGACTTTCCGGAACCGTTGGGACCGCAAAG 578784 Query 225892 GCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACC 225951 |||||| | | || ||||||| | ||| | || ||| || || |||||| |||| Sbjct 578783 ACCGTAACGCTGACCACGCTTGAGGCGGAGATGGGTCTGGTTGAGAAGAATCTTGGCACC 578724 Query 225952 ATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||||||| ||||| || | ||| || |||||||||||||| Sbjct 578723 ATAGGCAAGAGAGAAGGTACAGTTGCAAAGATCCTCACCCTCCTC 578679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621443816760