Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq66 347 2e-90 seq19 331 2e-85 >seq66 Length=1847925 Score = 347 bits (384), Expect = 2e-90 Identities = 1115/1710 (65%), Gaps = 59/1710 (3%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| || ||| |||| |||| || | |||||||||||||| |||||||| | Sbjct 1061219 TGAACTGGATAGGGGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCCAGTCTTGAGAC 1061278 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| || || ||||||| || | ||| |||| || || || | Sbjct 1061279 CAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATCGTG------GGATCCT 1061332 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 | | ||| | |||||||||||| ||| |||| ||| | | || || || | Sbjct 1061333 TCATGT---GAATG---TTGAGGGACTGGGACTGATCGATGAAAGCACCTCGGTCGGCAG 1061386 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 |||| || | | |||||| ||||| | | |||||||| | | ||||| || Sbjct 1061387 CCATCTGGACAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGCCTTGACGT 1061446 Query 243981 GCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCA 244040 | |||| ||||||||| | || || || | | || | || | || Sbjct 1061447 CGGCAGGGATGTTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAATACGGTTCTTCA 1061506 Query 244041 TGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCACC 244096 || ||| ||||| ||||| | | || ||| || ||||| | || || Sbjct 1061507 TGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCAGGGG----TTGACA 1061562 Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| ||||| || | || || ||||||||||| | |||| | || ||||||| | Sbjct 1061563 ACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAG 1061622 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 | ||| |||| ||||| ||||||| || || ||||| ||||| || | | |||||| Sbjct 1061623 CACTCGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGGAGCAGA 1061682 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT-GA--GCTCGTTCCAGTCCCACATG 244273 ||||| | | ||||| ||| | | ||| || |||| | ||||||||| | | Sbjct 1061683 CTGTTACGGATACCGTGAGTCTTAA--CATCCTCTCGAAGGCTC-TCCCAGTCCCAAAGG 1061739 Query 244274 CCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG 244333 | || ||| |||| | ||||||||| ||||| || | |||| | || Sbjct 1061740 TCGGA-AGGC--------TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCG 1061790 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTC 244392 || |||| | |||| | ||||||||| || || ||||| || || | || Sbjct 1061791 GGAGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAGGCAGT- 1061849 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGC 244451 |||||| |||| |||||||||||| |||||| |||||| | || | |||| || | Sbjct 1061850 GAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAG- 1061908 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | |||||| |||| || | ||| | || || || ||||| || || | |||| Sbjct 1061909 ACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGA 1061968 Query 244512 TGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 | |||| ||| ||| ||||| | || || |||| ||||| |||| | |||| Sbjct 1061969 TAGGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGA 1062028 Query 244572 TCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAAGTCG 244630 | | |||||| | ||||||| | || | ||| ||| | |||| || || || Sbjct 1062029 TGATCTTGTTCAAGTTGCGGACAA-CAACCTGACTGACCTGATGCAGCTTCTTGAAATCA 1062087 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || | | | || || | || ||| || | | ||||| | | ||| Sbjct 1062088 TA---GCAAGCCTCATCATAGTTGATGA-------AAGCAGGC--AGGGCAAGGGAGGCA 1062135 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 |||||||| || || ||||| || | | ||||| || ||||| ||||| || ||| Sbjct 1062136 AGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTA 1062195 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || ||||||||| |||| || || ||| |||| ||| ||||| |||||||| Sbjct 1062196 GAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAA 1062255 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 ||||||||||| ||||||||| |||||| |||||| | | ||| || | | Sbjct 1062256 AGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGG 1062315 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 ||||||| | | ||||| |||| || || |||||| ||| |||||||| ||| Sbjct 1062316 GCCTTGATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAAC 1062375 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCG 244990 || || || ||| | || || |||||| ||||||||||| ||||||| Sbjct 1062376 TCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCT 1062435 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 ||| | || || | || |||||| ||||| ||||||||||||||| |||| ||||| Sbjct 1062436 CCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCG 1062495 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCG 245110 | || | ||| ||| || |||||| | || || | || || ||||| || Sbjct 1062496 CGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCA 1062555 Query 245111 ACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCC 245170 ||||||| ||||| | ||||| ||| | || || || |||||||| || ||||| || Sbjct 1062556 GCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTTACCACCCTGATCA 1062615 Query 245171 ACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | || | |||||||| || || |||| || | ||||| || || Sbjct 1062616 ACGTAGCGGGC-AGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACC 1062674 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA--GGTTGCTGATGGACATGCCTAGT 245287 |||||| || ||||||| ||| || | | || | || || || | || | Sbjct 1062675 GTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTGAGA--CCAATA 1062732 Query 245288 CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347 || || || |||||| || | ||| ||| |||||| ||| || || || || ||| Sbjct 1062733 CCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATG 1062792 Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG 245407 |||||| |||||| | | || ||||| || || |||||||| | ||| | | | | Sbjct 1062793 CTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGGTTGAGGGGTACCAGCG 1062852 Query 245408 TTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||| || |||||| || ||||| ||| Sbjct 1062853 TTGAAGAGGGTGGGGGAAGCATGGGTGAAG 1062882 >seq19 Length=533231 Score = 331 bits (366), Expect = 2e-85 Identities = 598/862 (69%), Gaps = 32/862 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || |||||| |||||||||||||| || Sbjct 111824 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAGGAGATTGATCTC 111883 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAAC----GAAAAGTTTTTCCTCAA 42415 ||||||| | | | | ||| || |||||| || || |||| ||| || Sbjct 111884 TCCAAGGAT-CTCCACGATTGGAACAACCGTCTGACCACTGACGAGCAGTTCTTCATCTC 111942 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || ||||||||||| || ||||| ||||| ||||| |||||||| | | Sbjct 111943 TCACATCCTTGCCTTCTTCGCTGCTTCTGATGGCATTGTCAACGAGAACCTAGTTGAGCG 112002 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | |||||| || ||||||||||| ||||| || || Sbjct 112003 ATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATCATGAT 112062 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 ||||| | ||||| ||| || || ||||||| |||| |||||| ||| || Sbjct 112063 GGAGAATATTCACTCCGAGACCTATTCC---CTGCTCATTGACACCTACATCAAGGAGCC 112119 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| || | || || || ||||||||| |||||||| Sbjct 112120 TGCCCAGCGAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGC 112179 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| | |||||| || ||| | || || | | | | ||||| || Sbjct 112180 TGACTGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTGC 112239 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||||||||||| ||||||||| || ||||| |||||||||||||||||||| Sbjct 112240 CTTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 112299 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || |||||||| | |||||||| ||||| |||||| | || |||| Sbjct 112300 GAAGCGTGGCCTC-ATGCCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 112358 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | |||||||||||||| || ||| ||| ||| ||| | || | Sbjct 112359 GCCTTCACACCGACTTTGCCTGCCTTCTTCACTC---CCATCTCAAGGGCCGTGCTAGC- 112414 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 ||| || | ||| || |||||| || ||||| || ||| ||||||||||||| Sbjct 112415 AAGCAGATGATCCAGGACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACT 112474 Query 42951 CAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||| ||||| | |||||||| | |||| ||| ||||||| | Sbjct 112475 GAGGCTCTCCCCTGTG-CCCTGCTTGGCATGAATTCCAACCTGATGAAGCAGTACATTGA 112533 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063 || ||||| |||| ||| || | | |||| || || | ||||| | Sbjct 112534 GTTTGTCGCTGACCGTCTACT------CGTCGCTCTCGGCAACGAGAAGGTTTACAAGGC 112587 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | |||||||||||| |||||||||||||| | | |||||||||||||| ||||| Sbjct 112588 CACAAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGA 112647 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||||| ||||| ||||||||| Sbjct 112648 GAAGCGTGTCGCTGACTACCAG 112669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338220248080