Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq3 114 1e-20 seq19 113 4e-20 seq82 100 3e-16 >seq2 Length=1436644 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 785456 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 785515 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 785516 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 785575 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 785576 ACGTTG-TCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 785634 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 785635 CTTGACGAAAATCTGCATG 785653 >seq3 Length=1379917 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| || ||| Sbjct 687441 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 687500 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| ||||||||||||||| || || |||| Sbjct 687501 GCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 687560 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| ||| | || |||||||||| || Sbjct 687561 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 687620 Query 127097 TTTACAAAAATCTGCATG 127114 || || || || |||||| Sbjct 687621 TTGACGAAGATTTGCATG 687638 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || ||||| ||||| || Sbjct 686901 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 686960 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || ||||| || || |||||| |||| | |||||| || |||||||| Sbjct 686961 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGA 687020 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| |||||| | ||||||| Sbjct 687021 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACT 687080 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| || || || || || || ||||| Sbjct 687081 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| |||| || |||||| || || ||||| || ||| Sbjct 686703 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCA 686762 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || ||||||||||| || || ||| Sbjct 686763 GCGAAGATAAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGAATCTTGCTCTTC 686822 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||||| || | ||| | || || || || ||||| Sbjct 686823 ACGTTG-TCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGT 686881 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 686882 CTTGACGAAAATCTGCAT 686899 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | | || || ||| || ||||| || ||| Sbjct 687159 GTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 687218 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| || |||||||||||| ||| ||| |||| Sbjct 687219 GCAAAGATCAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTG 687278 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | |||||| || | || | || ||||| || || || Sbjct 687279 ACGTTG-TCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGT 687337 Query 127096 TTTTAC 127101 || || Sbjct 687338 CTTGAC 687343 >seq19 Length=533231 Score = 113 bits (124), Expect = 4e-20 Identities = 348/532 (65%), Gaps = 15/532 (3%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| | | || | ||| |||||| | || | ||||| || |||||||| Sbjct 112136 CTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGA 112195 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || | || | || || | ||| ||||| || | || ||||| ||||||| Sbjct 112196 TGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCCGTCGAG 112255 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 || |||||||| || |||||| | || || | | || | || | ||| Sbjct 112256 GGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATG 112315 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 ||||| | || || ||||||||| ||||| | || || ||||| |||||| ||||| Sbjct 112316 CCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCCTTCACACCGACTTT 112375 Query 47286 GCCTGTCT-CT--ACTACAA-CACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTC 47339 ||||| || || ||| | | | | || | || | | ||| | || | | Sbjct 112376 GCCTGCCTTCTTCACTCCCATCTCAAGGGCCGTGCTAGCAAGCAGA---TGATC-----C 112427 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 || ||||| || || |||||| |||||||| |||||| || | |||||||| ||| Sbjct 112428 AG-GACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCC 112486 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | | | || ||||| | | |||||| ||||||| || |||||||| ||| Sbjct 112487 TGTGCCCTGCTTGGCATGAATTCCAACCTGATGAAGCAGTACATTGAGTTTGTCGCTGAC 112546 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTT 47519 || || ||||| || | ||| ||||| | || || || ||||| || Sbjct 112547 CGTCTACTCGTCGCTCTCGGCAACGAGAAGGTTTACAAGGCCACAAACCCCTTCGACTTC 112606 Query 47520 ATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 ||| | ||||| || || | |||||||||||||| ||||||||||| |||| Sbjct 112607 ATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 112658 >seq82 Length=1669964 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 1275209 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 1275150 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 1275149 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 1275090 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 1275089 GGTCTTGCCCGTCAGGGTCTTGACGAAA 1275062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500306667920