Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq66 190 3e-43 >seq66 Length=1847925 Score = 190 bits (210), Expect = 3e-43 Identities = 957/1505 (64%), Gaps = 45/1505 (3%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || ||| || | | | || ||||||| ||||| ||| Sbjct 1061557 TTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGC 1061616 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| |||||||||| || || | || ||| || ||||| || || | | Sbjct 1061617 TCGAAGCACTCGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGG 1061676 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC-CTTGAGGGCG-TCCCAGTCGT 116041 || || ||||| |||| ||| | ||| | | | || || ||| |||||||| Sbjct 1061677 AGCAGACTGTTACGGATACCGTGAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCCC 1061734 Query 116042 AGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 116101 | | | || | | |||||| || |||||||||||||| | || || || | Sbjct 1061735 AAAGGTCGGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAG 1061794 Query 116102 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGA 116158 | |||| || || || || ||||| ||| ||||| | ||||| || || Sbjct 1061795 AACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG---GCAGTGA 1061851 Query 116159 GGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 116218 |||| ||||| || || |||||||| || | || | | | ||||| || | Sbjct 1061852 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1061911 Query 116219 CAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277 | || | | || || | || || |||| || ||||| || ||||| || || || Sbjct 1061912 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1061970 Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATA 116337 || || || | ||| || || ||||| | ||| || || || |||||| Sbjct 1061971 GGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATG 1062030 Query 116338 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 116397 | | | || | || | ||||||| ||| | ||| ||||| | | ||||| | Sbjct 1062031 ATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCATA- 1062089 Query 116398 CTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 || || ||| |||| ||| | ||| ||||| | || || || || || ||| Sbjct 1062090 --GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACA 1062147 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | | |||||| || |||||| || || || || |||| ||| || || ||| Sbjct 1062148 GCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGGATG 1062207 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 ||||| | |||||| || || ||| |||||| ||||||||||| ||||| | || Sbjct 1062208 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGG 1062267 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT 116633 | || ||||| || |||| || ||| || || | ||| | | || | | || | | Sbjct 1062268 TTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG----AT 1062323 Query 116634 GGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC 116690 || ||| | | || ||| ||||||||| |||||||||||||||||||||| | Sbjct 1062324 GGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCA-C 1062382 Query 116691 CACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCT 116749 | ||| || | || || || || | || || | ||| | ||| | || || Sbjct 1062383 CGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCT 1062442 Query 116750 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 116809 |||||| ||||||||||| ||||| ||||||||||| ||| ||| || || || || Sbjct 1062443 TCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGC 1062502 Query 116810 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 116869 | | || || | || || || || | || | || || | || ||| ||||||| Sbjct 1062503 GGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTGCC 1062562 Query 116870 ACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACAT 116923 | || || ||||| | || | | || | |||| |||| |||| | || | Sbjct 1062563 AAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTG---TTACCACCCTGATCAACGT 1062619 Query 116924 ACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 116983 | | || || ||| || || || ||||| |||| | ||| | ||| || || | Sbjct 1062620 AGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGG 1062679 Query 116984 TCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 117041 | || || || ||| | |||| | || |||| | | ||||||||| || Sbjct 1062680 TACCAGCAATGTAGGAGCC--AGTGGCACGGATTCGGTGGGCATTGAGACCAATACCACC 1062737 Query 117042 TGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 117101 ||| ||| || || || || | |||| | | ||||| || || || ||| Sbjct 1062738 AGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTC 1062797 Query 117102 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 117161 |||| | | | | |||||| || | || || || |||||||||||||| Sbjct 1062798 CTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGGTTGAGGGGTACCAGCGTTGAA 1062857 Query 117162 GAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAG 117219 |||||| || | || ||| ||| | | |||| |||||| | ||| ||||||||| Sbjct 1062858 GAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATGAGGTTGTATGTCTCCAAG 1062915 Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 ||| ||| || || || ||||| || || || ||||| | ||||| || || Sbjct 1062916 ACACGCTCAATATCATCGCCCCATATACCAATAGACACACGCATGATCATGTGCTGAGGA 1062975 Query 117280 GTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCA 117339 ||| | | | || || | | | ||||||| |||||| ||||||| ||| Sbjct 1062976 CGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAATGTCTTGAAGCCA 1063035 Query 117340 AAATA 117344 || || Sbjct 1063036 AAGTA 1063040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506563486280